Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add rerun ability to subspecies classification service #487

Merged
merged 2 commits into from
Dec 6, 2022
Merged

add rerun ability to subspecies classification service #487

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
499b3f3
add rerun ability to subspecies class
kscgl Dec 2, 2022
2940d3d
remove SubspeciesClassification with typo
kscgl Dec 2, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion public/js/p3/widget/RerunUtility.js
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@ define([], function () {
// 'PhylogeneticTree': 'PhylogeneticTree',
'PrimerDesign': 'PrimerDesign',
'RNASeq': 'Rnaseq',
'SubSpeciesClassification': 'SubspeciesClassification',
'SubspeciesClassification': 'SubspeciesClassification',
'TaxonomicClassification': 'TaxonomicClassification',
'TnSeq': 'Tnseq',
'Variation': 'Variation'
Expand Down
16 changes: 6 additions & 10 deletions public/js/p3/widget/app/SubspeciesClassification.js
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -72,6 +72,7 @@ define([

this.onInputChange(true);

this.virus_type.addOption(VirusTypes);
this._started = true;
this.form_flag = false;
var _self = this;
Expand All @@ -87,7 +88,6 @@ define([
localStorage.removeItem('bvbrc_rerun_job');
}
}
this.virus_type.addOption(VirusTypes);
},

openJobsList: function () {
Expand Down Expand Up @@ -237,14 +237,7 @@ define([
if (sessionStorage.hasOwnProperty(rerun_key)) {
this.form_flag = true;
var job_data = JSON.parse(sessionStorage.getItem(rerun_key));
console.log('job_data=', job_data);
var param_dict = { 'output_folder': 'output_path' };
var service_specific = { 'input_fasta_data': 'sequence' };
param_dict['service_specific'] = service_specific;
this.setInputSource(job_data);
console.log('query_genomegroup=', this.query_genomegroup.value);
console.log('query_genomegroup(value)=', this.query_genomegroup.get('value'));
AppBase.prototype.intakeRerunFormBase.call(this, param_dict);
sessionStorage.removeItem(rerun_key);
}
}
Expand All @@ -255,13 +248,13 @@ define([
if (s === 'fasta_data') {
this.input_sequence.set('checked', true);
this.input_fasta.set('checked', false);
this.input_group.set('checked', false);
//this.input_group.set('checked', false);
this.sequence.set('value', job_data['input_fasta_data']);
}
else if (s === 'fasta_file') {
this.input_fasta.set('checked', true);
this.input_sequence.set('checked', false);
this.input_group.set('checked', false);
//this.input_group.set('checked', false);
this.query_fasta.set('value', job_data['input_fasta_file']);
}
else if (s === 'genome_group') {
Expand All @@ -270,6 +263,9 @@ define([
this.input_fasta.set('checked', false);
this.query_genomegroup.set('value', job_data['input_genome_group']);
}

this.output_path.set('value', job_data['output_path']);
this.virus_type.set('value', job_data['virus_type']);
}
});
});