This repository includes three papers about cell:
- Exponential Distance Transform Maps for Cell Localization; Paper
- Multi-scale Hypergraph-based Feature Alignment Network for Cell Localization; Paper
- Lite-UNet: A lightweight and efficient network for cell localization. Paper
- Download all dataset from Google-Drive
Download MHFAN:
git clone https://github.com/Boli-trainee/MHFAN
python >=3.6
pytorch >=1.4
opencv-python >=4.0
scipy >=1.4.0
h5py >=2.10
pillow >=7.0.0
imageio >=1.18
nni >=2.0 (python3 -m pip install --upgrade nni)
and so on
cd data
python CoNIC_process.py
# Generate all datasets by this way
Generate image file list: python make_npydata.py
python train.py --dataset BCData
python test.py
This code is based on FIDTM (https://github.com/dk-liang/FIDTM). Many thanks for your code implementation.
If you find this project is useful for your research, please cite:
@article{li2024multi,
title={Multi-scale hypergraph-based feature alignment network for cell localization},
author={Li, Bo and Yong, Zhang and Zhang, Chengyang and Piao, Xinglin and Hu, Yongli and Yin, Baocai},
journal={Pattern Recognition},
pages={110260},
year={2024},
publisher={Elsevier}
}
@article{li2024exponential,
title={Exponential distance transform maps for cell localization},
author={Li, Bo and Chen, Jie and Yi, Hang and Feng, Min and Yang, Yongquan and Zhu, Qikui and Bu, Hong},
journal={Engineering Applications of Artificial Intelligence},
volume={132},
pages={107948},
year={2024},
publisher={Elsevier}
}
@article{li2024lite,
title={Lite-UNet: A lightweight and efficient network for cell localization},
author={Li, Bo and Zhang, Yong and Ren, Yunhan and Zhang, Chengyang and Yin, Baocai},
journal={Engineering Applications of Artificial Intelligence},
volume={129},
pages={107634},
year={2024},
publisher={Elsevier}
}
@article{liang2022focal,
title={Focal inverse distance transform maps for crowd localization},
author={Liang, Dingkang and Xu, Wei and Zhu, Yingying and Zhou, Yu},
journal={IEEE Transactions on Multimedia},
year={2022},
publisher={IEEE}
}