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fix: allow simphenotype to accept TR PGENs without --repeats #263

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merged 2 commits into from
Nov 27, 2024

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@aryarm aryarm commented Nov 26, 2024

If --repeats wasn't specified but the input hap file only contains R lines, simphenotype should automatically load the genotypes file with GenotypesTR or GenotypesPLINKTR. However, at the moment, it only uses GenotypesTR and not GenotypesPLINKTR

So this PR adds support for PGEN files, as well

@aryarm aryarm marked this pull request as ready for review November 26, 2024 20:51
@aryarm aryarm requested a review from mlamkin7 November 26, 2024 21:02
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aryarm commented Nov 27, 2024

thanks for the review, Michael! 🙌

@aryarm aryarm merged commit 16a84d1 into main Nov 27, 2024
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@aryarm aryarm deleted the feat/plinktr-integration branch November 27, 2024 19:21
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2 participants