Update Record Linkage Container to utilize and make the external person id accessible

containers/record-linkage/Dockerfile

@@ -2,6 +2,10 @@ FROM python:3.10-slim
 
 WORKDIR /code
 
+RUN apt-get update && \
+    apt-get upgrade -y && \
+    apt-get install -y git
+
 COPY ./requirements.txt /code/requirements.txt
 RUN pip install -r requirements.txt
 

containers/record-linkage/app/main.py

@@ -163,9 +163,7 @@ async def link_record(input: LinkRecordInput, response: Response) -> LinkRecordR
 
     input = dict(input)
     input_bundle = input.get("bundle", {})
-    # TODO: Once the code that includes the external_person_id in
-    # the sdk is merged, then bring back the external_id code here
-    # external_id = input.get("external_person_id", None)
+    external_id = input.get("external_person_id", None)
 
     # Check that DB type is appropriately set up as Postgres so
     # we can fail fast if it's not
@@ -203,12 +201,10 @@ async def link_record(input: LinkRecordInput, response: Response) -> LinkRecordR
 
     # Initialize a DB connection for use with the MPI
     # Then, link away
-    # TODO: Once the code that includes the external_person_id in
-    # the sdk is merged, then bring back the external_id code here
     try:
         db_client = connect_to_mpi_with_env_vars()
         (found_match, new_person_id) = link_record_against_mpi(
-            record_to_link, algo_config, db_client  # , external_id
+            record_to_link, algo_config, db_client, external_id
         )
         updated_bundle = add_person_resource(
             new_person_id, record_to_link.get("id", ""), input_bundle

containers/record-linkage/requirements.txt

@@ -1,6 +1,6 @@
 fastapi
 uvicorn
-phdi
+phdi @ git+https://github.com/CDCgov/phdi@main
 httpx
 pathlib
 pydantic