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Remove the DocumentReference from the EICR templates for the FHIR Converter #608

Merged
merged 13 commits into from
May 23, 2023
Merged

Remove the DocumentReference from the EICR templates for the FHIR Converter #608

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519f1d5
Update EICR.liquid
BradySkylight May 22, 2023
77bc5da
Merge branch 'main' into brady/fix-standardize-name-too-big-error
BradySkylight May 23, 2023
0996c36
Update requirements.txt
BradySkylight May 23, 2023
57d1cee
Added pydantic with a specific version for all the different containers
BradySkylight May 23, 2023
769fa3c
remove fastapi and make sure phdi comes first and then install pydant…
BradySkylight May 23, 2023
04d44fc
added fastapi back in
BradySkylight May 23, 2023
655fcff
satisfy pydantic and fastapi requirements before phdi
BradySkylight May 23, 2023
39466f9
Update poetry.lock
BradySkylight May 23, 2023
4037026
Using specified fix out on github to use typing_extensions for Litera…
BradySkylight May 23, 2023
c2ae95e
fixed typo
BradySkylight May 23, 2023
d7ed222
Force typing to be at version 4.5.0
BradySkylight May 23, 2023
f929c19
update forcing version for typing-extension
BradySkylight May 23, 2023
c3f1fc1
fixed typo
BradySkylight May 23, 2023
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4 changes: 3 additions & 1 deletion containers/alerts/requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,10 @@ azure-communication-identity
azure-communication-phonenumbers
azure-communication-sms
azure-identity
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
fastapi
uvicorn
httpx
slack_sdk
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3 changes: 0 additions & 3 deletions containers/fhir-converter/Templates/eCR/EICR.liquid
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Expand Up @@ -20,8 +20,5 @@
{% include 'Section/MentalStatus' -%}
{% include 'Section/Nutrition' -%}
{% include 'Section/Payer' -%}

{% assign documentId = msg | to_json_string | generate_uuid -%}
{% include 'Resource/DocumentReference' documentReference: msg ID: documentId -%}
]
}
8 changes: 5 additions & 3 deletions containers/ingestion/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,6 @@
fastapi
uvicorn
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
httpx
uvicorn
httpx
6 changes: 4 additions & 2 deletions containers/message-parser/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
fastapi
uvicorn
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
uvicorn
httpx
pytest
frozendict
5 changes: 3 additions & 2 deletions containers/record-linkage/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
fastapi
typing_extensions==4.5.0
uvicorn
pydantic==1.9.0
fastapi==0.95.0
phdi @ git+https://github.com/CDCgov/phdi@main
httpx
pathlib
pydantic
8 changes: 5 additions & 3 deletions containers/tabulation/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
fastapi
uvicorn
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
uvicorn
httpx
pytest
jsonschema
jsonschema
8 changes: 5 additions & 3 deletions containers/validation/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
fastapi
uvicorn
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
uvicorn
httpx
pytest
jsonschema
jsonschema
1 change: 0 additions & 1 deletion phdi/tabulation/tables.py
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Expand Up @@ -6,7 +6,6 @@
import pyarrow.parquet as pq
import sqlite3 as sql
import yaml

from typing import Literal, List, Union
from jsonschema import validate
import importlib.resources
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