Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update python #647

Merged
merged 28 commits into from
Jun 13, 2023
Merged

Update python #647

Show file tree
Hide file tree
Changes from 27 commits
Commits
Show all changes
28 commits
Select commit Hold shift + click to select a range
d89c66e
update python version
KennethSkylight Jun 1, 2023
9b3d820
chanigng test_runner_version
KennethSkylight Jun 1, 2023
d3d6642
update pyarrow
KennethSkylight Jun 1, 2023
90b83ce
Merge branch 'main' into kenneth/update-python
KennethSkylight Jun 6, 2023
a617a24
pointing phdi to my branch
KennethSkylight Jun 7, 2023
e3ef787
changing requiremeents to new branchname
KennethSkylight Jun 7, 2023
62d3dd0
Add git to dockerfile
KennethSkylight Jun 7, 2023
0bc2727
Added a few more lines to run
KennethSkylight Jun 7, 2023
ea5cb90
adding git commands to docker
KennethSkylight Jun 7, 2023
74186d4
add git
KennethSkylight Jun 7, 2023
905590a
3.11 docker
KennethSkylight Jun 7, 2023
ce7b15d
change python version
KennethSkylight Jun 7, 2023
7563a3b
changing uvloop
KennethSkylight Jun 7, 2023
25bb373
upgrade requirements.txt fhir converter
KennethSkylight Jun 7, 2023
626fe57
fixing requirements.txt
KennethSkylight Jun 7, 2023
9d2f0fb
removing httptools
KennethSkylight Jun 7, 2023
9d24cf3
changing back to 0.5.0
KennethSkylight Jun 7, 2023
a775eec
chanigng back
KennethSkylight Jun 7, 2023
63931f1
dummy commit to trigger build
KennethSkylight Jun 7, 2023
d03d44a
dummy commit
KennethSkylight Jun 7, 2023
ca77ae2
change to 0.5.0
KennethSkylight Jun 7, 2023
a58e338
remove dummy commits
KennethSkylight Jun 7, 2023
7de0db4
changing pydantic and fastapi version
KennethSkylight Jun 7, 2023
74c57b9
fix git versions
KennethSkylight Jun 7, 2023
6ce5a8e
update the rest of them
KennethSkylight Jun 7, 2023
aced17a
change starlette
KennethSkylight Jun 7, 2023
dd499c6
Merge branch 'main' into updatepython
KennethSkylight Jun 12, 2023
0273267
Merge branch 'main' into updatepython
KennethSkylight Jun 13, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion .github/workflows/test.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ on:


env:
TEST_RUNNER_PYTHON_VERSION: 3.9
TEST_RUNNER_PYTHON_VERSION: 3.11

jobs:
postgres-tests:
Expand Down
6 changes: 5 additions & 1 deletion containers/alerts/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,11 @@
FROM python:3.10-slim
FROM python:3.11-slim

WORKDIR /code

RUN apt-get update && \
apt-get upgrade -y && \
apt-get install -y git

COPY ./requirements.txt /code/requirements.txt
RUN pip install -r requirements.txt

Expand Down
6 changes: 3 additions & 3 deletions containers/alerts/requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,9 +3,9 @@ azure-communication-phonenumbers
azure-communication-sms
azure-identity
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
pydantic==1.10.9
fastapi==0.96.0
phdi @ git+https://github.com/CDCgov/phdi@updatepython
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

change this before merging

uvicorn
httpx
slack_sdk
Expand Down
10 changes: 5 additions & 5 deletions containers/fhir-converter/requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@ charset-normalizer==2.1.0
click==8.1.3
dnspython==2.2.1
email-validator==1.2.1
fastapi==0.92.0
fastapi==0.96.0
h11==0.13.0
httpcore==0.17.0
httptools==0.4.0
httptools==0.5.0
httpx==0.24.0
idna==3.3
iniconfig==1.1.1
Expand All @@ -20,7 +20,7 @@ orjson==3.7.11
packaging==21.3
pluggy==1.0.0
py==1.11.0
pydantic==1.9.1
pydantic==1.10.9
pyparsing==3.0.9
pytest==7.1.2
python-dotenv==0.20.0
Expand All @@ -29,13 +29,13 @@ PyYAML==6.0
requests==2.28.1
six==1.16.0
sniffio==1.2.0
starlette==0.25.0
starlette==0.27.0
tomli==2.0.1
typing_extensions==4.3.0
ujson==5.4.0
urllib3==1.26.11
uvicorn==0.17.6
uvloop==0.16.0
uvloop==0.17.0
watchgod==0.8.2
websockets==10.3
uuid
6 changes: 5 additions & 1 deletion containers/ingestion/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,11 @@
FROM python:3.10-slim
FROM python:3.11-slim

WORKDIR /code

RUN apt-get update && \
apt-get upgrade -y && \
apt-get install -y git

COPY ./requirements.txt /code/requirements.txt
RUN pip install -r requirements.txt

Expand Down
8 changes: 4 additions & 4 deletions containers/ingestion/requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
typing_extensions==4.6.3
pydantic==1.10.9
fastapi==0.96.0
phdi @ git+https://github.com/CDCgov/phdi@updatepython
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

also change before merging

uvicorn
httpx
6 changes: 5 additions & 1 deletion containers/message-parser/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,11 @@
FROM python:3.10-slim
FROM python:3.11-slim

WORKDIR /code

RUN apt-get update && \
apt-get upgrade -y && \
apt-get install -y git

COPY ./requirements.txt /code/requirements.txt
RUN pip install -r requirements.txt

Expand Down
6 changes: 3 additions & 3 deletions containers/message-parser/requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
pydantic==1.10.9
fastapi==0.96.0
phdi @ git+https://github.com/CDCgov/phdi@updatepython
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

another

uvicorn
httpx
pytest
Expand Down
4 changes: 2 additions & 2 deletions containers/record-linkage/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
FROM python:3.10-slim
FROM python:3.11-slim

WORKDIR /code

RUN apt-get update && \
apt-get upgrade -y && \
apt-get install -y git

COPY ./requirements.txt /code/requirements.txt
RUN pip install -r requirements.txt

Expand Down
6 changes: 3 additions & 3 deletions containers/record-linkage/requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
typing_extensions==4.5.0
uvicorn
pydantic==1.9.0
fastapi==0.95.0
phdi @ git+https://github.com/CDCgov/phdi@main
pydantic==1.10.9
fastapi==0.96.0
phdi @ git+https://github.com/CDCgov/phdi@updatepython
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

and here

httpx
pathlib
4 changes: 3 additions & 1 deletion containers/tabulation/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM python:3.10-slim
FROM python:3.11-slim

WORKDIR /code

Expand All @@ -8,6 +8,8 @@ RUN apt-get -y update && \
apt-get upgrade -y && \
apt-get -y install gcc

RUN apt-get install -y git

COPY ./requirements.txt /code/requirements.txt
RUN pip install -r requirements.txt

Expand Down
6 changes: 3 additions & 3 deletions containers/tabulation/requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
pydantic==1.10.9
fastapi==0.96.0
phdi @ git+https://github.com/CDCgov/phdi@updatepython
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

and another

uvicorn
httpx
pytest
Expand Down
6 changes: 5 additions & 1 deletion containers/validation/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,11 @@
FROM python:3.10-slim
FROM python:3.11-slim

WORKDIR /code

RUN apt-get update && \
apt-get upgrade -y && \
apt-get install -y git

COPY ./requirements.txt /code/requirements.txt
RUN pip install -r requirements.txt

Expand Down
6 changes: 3 additions & 3 deletions containers/validation/requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
typing_extensions==4.5.0
pydantic==1.9.0
fastapi==0.95.0
phdi
pydantic==1.10.9
fastapi==0.96.0
phdi @ git+https://github.com/CDCgov/phdi@updatepython
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

here

uvicorn
httpx
pytest
Expand Down
Loading