Shallow-water equations on the cubed-sphere miniapp#550

Draft

valeriabarra wants to merge 37 commits intomainfrom valeria/shallow-water

+3,479-23

Commits on Mar 21, 2021

tap.sh: Update after rebasing onto main

valeriabarra
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LeilaGhaffari
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Initial development of SWE solver

valeriabarra
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LeilaGhaffari
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SWE: support for PETSc-3.14 DMPlexGetClosureIndices and DMPlexRestoreClosureIndices

valeriabarra
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LeilaGhaffari
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Add copyright statement, improve summary print and other small edits

valeriabarra
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LeilaGhaffari
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Update tap.sh after rebasing with master

valeriabarra
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LeilaGhaffari
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Add FormJacobian function

valeriabarra
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LeilaGhaffari
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Put H0 as a global variable and compute hs as part of qdata

valeriabarra
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LeilaGhaffari
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Add documentation

valeriabarra
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LeilaGhaffari
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SWE: Add advection test case and skeleton for geostrophic test

valeriabarra
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LeilaGhaffari
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Makefile: fix clean target recursive rm

valeriabarra
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LeilaGhaffari
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Debugging after changing ncompq

valeriabarra
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LeilaGhaffari
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WIP: Jacobian for advection test case

valeriabarra
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LeilaGhaffari
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SWE: Assign DM label 'panel' for different faces of initial cube

valeriabarra
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LeilaGhaffari
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SWE: Add FindPanelEdgeNodes() function to determine which nodes are on the cube edges

valeriabarra
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LeilaGhaffari
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Update comment in area and bpssphere setups

valeriabarra
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LeilaGhaffari
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SWE: Define coordinate transformations for points expressed with local coordinate systems on different panels (faces) of the cube

valeriabarra
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LeilaGhaffari
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Add TESTARGS and update sample runs

valeriabarra
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LeilaGhaffari
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SWE: Change panel ordering, following papers convention

valeriabarra
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LeilaGhaffari
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SWE: Fix bit manipulation algorithm in parallel

valeriabarra
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LeilaGhaffari
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SWE: Update DMPlexCreateSphereMesh() call after change in PETSc's API and add compatibility macro

valeriabarra
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LeilaGhaffari
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Bpssphere: improve comment

valeriabarra
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LeilaGhaffari
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SWE: WIP Improve comment and change in geom factors QFunction

valeriabarra
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LeilaGhaffari
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SWE: Transform 3D global coords to 2D local panel coords and update QFunctionSetContenxt after PR#596

valeriabarra
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LeilaGhaffari
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SWE: WIP geometric factors local to panel coord systems

valeriabarra
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LeilaGhaffari
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SWE: Put back geometric factors as they were

valeriabarra
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LeilaGhaffari
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WIP SWE: pass sparse matrix to user context to be used in wrapper functions

valeriabarra
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LeilaGhaffari
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SWE: Inside Setup QFunction make sure to project coordinate field onto unit sphere

valeriabarra
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LeilaGhaffari
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examples/fluids: fix usage bugs

jedbrown
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LeilaGhaffari
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SWE: Fix set context bug after change in the interface

valeriabarra
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LeilaGhaffari
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SWE WIP: Fix a bug in advection QFunction

valeriabarra
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LeilaGhaffari
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SWE: Initial implementation of generic restriction matrix

valeriabarra
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LeilaGhaffari
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examples/fluids: Move setup-boundary.h to navier-stokes
LeilaGhaffari
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SWE: fixed the double prototyping
LeilaGhaffari
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SWE: style
LeilaGhaffari
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SWE: fix the weak form in the explicit scheme
LeilaGhaffari
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SWE: more comments and update the docs
LeilaGhaffari
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SWE: some comments on the div operations
LeilaGhaffari
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