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added the dockerfile for checkm #376

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14 changes: 14 additions & 0 deletions docker/Dockerfile
Original file line number Diff line number Diff line change
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FROM ubuntu:latest
ENV DEBIAN_FRONTEND=noninteractive

RUN apt-get update \
&& apt install -y git python3-pip hmmer prodigal pplacer wget \
&& pip3 install numpy matplotlib pysam checkm-genome

RUN wget https://data.ace.uq.edu.au/public/CheckM_databases/checkm_data_2015_01_16.tar.gz && tar -zxvf checkm_data_2015_01_16.tar.gz
RUN rm checkm_data_2015_01_16.tar.gz

ENV CHECKM_DATA_PATH=/
ENV PATH="$HOME/.local/bin:$PATH"
CMD checkm