NEKO v0.8.0 #213
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| # Controls when the action will run. | |
| on: | |
| pull_request: | |
| branches: [master] | |
| workflow_dispatch: | |
| jobs: | |
| linting: | |
| name: "Flint" | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Setup env. | |
| run: | | |
| sudo apt-get update && sudo apt-get install -yq python3-dev python3-pip python3-tk | |
| pip install nobvisual==0.2.0 flinter==0.4.0 | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Lint | |
| run: | | |
| flint score src/ -d 10 -r flinter_rc.yml | tee flint.txt | |
| score=$(awk '$1==0{print $3}' flint.txt) | |
| if (( $(echo "$score < 8.02" |bc -l) )) ; then | |
| exit 1 | |
| fi | |
| - name: Archive linter report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: flint-report | |
| path: flint.txt | |
| retention-days: 5 | |
| GNU: | |
| needs: linting | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-20.04, macos-13] | |
| compiler: [gfortran-10, gfortran-11, gfortran-12] | |
| backend: [cpu, cuda, hip, opencl] | |
| precision: [sp, dp] | |
| exclude: | |
| - os: ubuntu-20.04 | |
| compiler: gfortran-11 | |
| - os: ubuntu-20.04 | |
| compiler: gfortran-12 | |
| - os: ubuntu-20.04 | |
| backend: opencl | |
| - os: macos-13 | |
| compiler: gfortran-10 | |
| - os: macos-13 | |
| backend: cuda | |
| - os: macos-13 | |
| backend: hip | |
| include: | |
| - os: ubuntu-20.04 | |
| setup-env: | | |
| sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3 cmake-curses-gui | |
| - os: macos-13 | |
| setup-env: export HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=1 && brew install openmpi && brew install automake && brew install gcc@11 && brew install gcc@12 | |
| env: | |
| FC: ${{ matrix.compiler }} | |
| OMPI_FC: ${{ matrix.compiler }} | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| RP: ${{ matrix.precision }} | |
| name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }} | |
| steps: | |
| - name: Setup env. | |
| run: ${{ matrix.setup-env }} | |
| - name: Cache pFUnit | |
| id: cache-pfunit | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/pfunit | |
| key: pfunit-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Build pFUnit | |
| if: ${{ (steps.cache-pfunit.outputs.cache-hit != 'true') && (matrix.backend == 'cpu') }} | |
| run: | | |
| git clone --depth 1 https://github.com/Goddard-Fortran-Ecosystem/pFUnit.git -b v4.4.2 | |
| cd pFUnit | |
| cat >> pfunit_error_stop.patch << _ACEOF | |
| diff --git a/src/funit/FUnit.F90 b/src/funit/FUnit.F90 | |
| index 7df7b65..4f7dbf5 100644 | |
| --- a/src/funit/FUnit.F90 | |
| +++ b/src/funit/FUnit.F90 | |
| @@ -168,7 +168,7 @@ contains | |
| #if defined(PGI) | |
| call exit(-1) | |
| #else | |
| - stop '*** Encountered 1 or more failures/errors during testing. ***' | |
| + error stop '*** Encountered 1 or more failures/errors during testing. ***' | |
| #endif | |
| end if | |
| _ACEOF | |
| git apply pfunit_error_stop.patch && mkdir b && cd b | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/pfunit .. | |
| make -j$(nproc) && make install && cd ../../ | |
| - name: Cache json-fortran | |
| id: cache-json-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/json-fortran | |
| key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Install json-fortran | |
| if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }} | |
| run: | | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| rm -f ${HOME}/pkg/json-fortran/lib/*.dylib | |
| - name: Setup json-fortran | |
| run: | | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Build (CPU backend) | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| echo $PKG_CONFIG_PATH | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --with-pfunit=${HOME}/pkg/pfunit/PFUNIT-4.4 --enable-real=${RP} | |
| make -j$(nproc) | |
| - name: Build (CUDA backend) | |
| if: matrix.backend == 'cuda' | |
| run: | | |
| sudo apt-get install -y nvidia-cuda-toolkit | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --enable-real=${RP} --with-cuda=/usr | |
| make -j$(nproc) | |
| - name: Build (HIP backend) | |
| if: matrix.backend == 'HIP' | |
| run: | | |
| wget -q -O - https://repo.radeon.com/rocm/rocm.gpg.key | sudo apt-key add - | |
| echo 'deb [arch=amd64] https://repo.radeon.com/rocm/apt/debian/ ubuntu main' | sudo tee /etc/apt/sources.list.d/rocm.list | |
| sudo apt-get update && sudo apt-get install -y rocm-dev | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" HIP_HIPCC_FLAGS="-O2 -fPIE" --enable-real=${RP} --with-hip=/opt/rocm-6.1.2 | |
| make -j$(nproc) | |
| - name: Build (OpenCL backend) | |
| if: matrix.backend == 'opencl' | |
| run: | | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --enable-real=${RP} --with-opencl | |
| make -j$(nproc) | |
| - name: Check | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| ls ${HOME}/pkg/json-fortran/lib/ | |
| make -j$(nproc) check | |
| - name: Archive test report | |
| if: matrix.backend == 'cpu' && failure() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: Test report_${{ matrix.os }}_${{ matrix.compiler }} | |
| path: tests/test-suite.log | |
| retention-days: 2 | |
| - name: Dist (CPU backend) | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| ./configure FC=${FC} --enable-real=${RP} | |
| make -j $(nproc) | |
| - name: Dist (CUDA backend) | |
| if: matrix.backend == 'cuda' | |
| run: | | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| ./configure FC=${FC} --enable-real=${RP} --with-cuda=/usr | |
| make -j $(nproc) | |
| - name: Dist (HIP backend) | |
| if: matrix.backend == 'hip' | |
| run: | | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| ./configure FC=${FC} FCFLAGS="-fPIE" --enable-real=${RP} HIP_HIPCC_FLAGS="-O2 -fPIE" --with-hip=/opt/rocm-6.1.2 | |
| make -j $(nproc) | |
| - name: Dist (OpenCL backend) | |
| if: matrix.backend == 'opencl' | |
| run: | | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| ./configure FC=${FC} --enable-real=${RP} --with-opencl | |
| make -j $(nproc) | |
| Intel: | |
| needs: linting | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04] | |
| compiler: [ifort, ifx] | |
| precision: [sp, dp] | |
| backend: [cpu] | |
| include: | |
| - os: ubuntu-20.04 | |
| setup-env: | | |
| wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null && echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list && sudo apt-get update -y && sudo apt install -y --no-install-recommends intel-oneapi-compiler-fortran intel-oneapi-mpi intel-oneapi-mpi-devel intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic | |
| source /opt/intel/oneapi/setvars.sh | |
| sudo apt install -y autoconf automake autotools-dev libopenblas-dev make git m4 python3 ca-certificates cmake | |
| INTEL_PATH=$(find /opt/intel/oneapi/compiler/ -name "${FC}" -type f | xargs dirname) | |
| export PATH=$INTEL_PATH:${PATH} | |
| printenv >> $GITHUB_ENV | |
| env: | |
| CC: icc | |
| FC: ${{ matrix.compiler }} | |
| RP: ${{ matrix.precision }} | |
| name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }} | |
| steps: | |
| - name: Setup env. | |
| run: ${{ matrix.setup-env }} | |
| - name: Cache json-fortran | |
| id: cache-json-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/json-fortran | |
| key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Install json-fortran | |
| if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }} | |
| run: | | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| env FC=${FC} cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc | |
| - name: Setup json-fortran | |
| run: | | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Build | |
| run: | | |
| echo $PKG_CONFIG_PATH | |
| ./regen.sh | |
| ./configure FC=${FC} CC=${CC} MPIFC"=mpiifort -fc=${FC}" --enable-real=${RP} | |
| make FCFLAGS="-O2 -stand f08 -warn errors `pkg-config --cflags json-fortran`" -j$(nproc) | |
| NVIDIA: | |
| needs: linting | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-20.04] | |
| compiler: [nvfortran] | |
| backend: [cpu, cuda] | |
| precision: [dp] | |
| include: | |
| - os: ubuntu-20.04 | |
| setup-env: sudo apt-get update && sudo apt-get install -y autoconf automake autotools-dev make git m4 libopenblas-dev && curl https://developer.download.nvidia.com/hpc-sdk/ubuntu/DEB-GPG-KEY-NVIDIA-HPC-SDK | sudo gpg --dearmor -o /usr/share/keyrings/nvidia-hpcsdk-archive-keyring.gpg && echo 'deb [signed-by=/usr/share/keyrings/nvidia-hpcsdk-archive-keyring.gpg] https://developer.download.nvidia.com/hpc-sdk/ubuntu/amd64 /' | sudo tee /etc/apt/sources.list.d/nvhpc.list && sudo apt-get update -y && sudo apt-get install -y nvhpc-24-3 && NVARCH=`uname -s`_`uname -m`; export NVARCH && NVCOMPILERS=/opt/nvidia/hpc_sdk; export NVCOMPILERS && PATH=$NVCOMPILERS/$NVARCH/24.3/compilers/bin:$PATH; export PATH && export PATH=$NVCOMPILERS/$NVARCH/24.3/comm_libs/mpi/bin:$PATH && printenv >> $GITHUB_ENV | |
| env: | |
| CC: gcc | |
| FC: ${{ matrix.compiler }} | |
| OMPI_FC: ${{ matrix.compiler }} | |
| OMPI_CC: gcc | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| RP: ${{ matrix.precision }} | |
| name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }} | |
| steps: | |
| - name: Setup env. | |
| run: ${{ matrix.setup-env }} | |
| - name: Cache json-fortran | |
| id: cache-json-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/json-fortran | |
| key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Install json-fortran | |
| if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }} | |
| run: | | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc | |
| - name: Setup json-fortran | |
| run: | | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Build (CPU backend) | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| git apply patches/nvhpc_bge.patch | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} | |
| make | |
| - name: Build (CUDA backend) | |
| if: matrix.backend == 'cuda' | |
| run: | | |
| git apply patches/nvhpc_bge.patch | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/24.3/cuda/ | |
| make | |
| - name: Dist (CPU backend) | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| git stash | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| patch -u src/common/signal.f90 -i patches/nvhpc_bge.patch | |
| ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} | |
| make -j $(nproc) | |
| - name: Dist (CUDA backend) | |
| if: matrix.backend == 'cuda' | |
| run: | | |
| git stash | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| patch -u src/common/signal.f90 -i patches/nvhpc_bge.patch | |
| ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/24.3/cuda/ | |
| make -j $(nproc) | |
| ReFrame: | |
| needs: GNU | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| precision: [sp, dp] | |
| compiler: [gfortran-10] | |
| env: | |
| FC: ${{ matrix.compiler }} | |
| OMPI_FC: ${{ matrix.compiler}} | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| RP: ${{ matrix.precision }} | |
| name: ReFrame / ${{ matrix.compiler}} / ${{ matrix.precision }} | |
| steps: | |
| - name: Setup env. | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3 | |
| pip install reframe-hpc | |
| - name: Cache json-fortran | |
| id: cache-json-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/json-fortran | |
| key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Install json-fortran | |
| if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }} | |
| run: | | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc | |
| - name: Setup json-fortran | |
| run: | | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Topology | |
| run: | | |
| reframe --detect-host-topology | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Regression tests | |
| run: | | |
| ./regen.sh | |
| cd reframe | |
| env NEKO_REAL=${RP} NEKO_SCHEME=pnpn reframe -v -C settings.py -c checks.py -n MiniHemi -n MiniTgv8 -n MiniRB -r --performance-report --system github-actions:cpu | |
| documentation: | |
| needs: [Intel, GNU, NVIDIA, ReFrame] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup env. | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y git openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3 doxygen fonts-freefont-ttf graphviz | |
| git clone https://github.com/ExtremeFLOW/doxygen-awesome-css doc/doxygen-awesome-css | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Doxygen | |
| run: | | |
| ./regen.sh | |
| ./configure FC=${FC} | |
| make html | |
| # Deploy the HTML documentation to GitHub Pages | |
| - name: GH Pages Deployment | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./doc/html/ | |
| allow_empty_commit: false | |
| force_orphan: false | |
| publish_branch: gh-pages | |
| destination_dir: docs/release | |
| keep_files: false | |
| enable_jekyll: true |