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Add pytest to deps and CI #5

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Add pytest to deps and CI #5

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Commits on Apr 30, 2024

  1. misc fixes

    Fixes
    * Allow the HDF filename to be passed to main function instead
      of only io_manager instance.  Having main only accept io_manager
      broke all ipython notebooks.
    * Removed "print(table)" from readUCI which I think was a
      debugging statement.
    IPython Notebook Fixes
    * Edited some of the ipython notebooks that tried to find an
      element time-series with an old name, for example tried to
      find "SURO" instead of the new name "SURO_sum".
    * Edited some of the ipython notebooks so that filenames were
      case sensitive.
    Deprecations
    * The append function is no longer available for DataFrames and
      changed to pd.concat form.
    * In pandas 3.0, to_hdf will require the "key" to be a keyword
      argument instead of a positional argument and made that change
      now to silence the deprecation message.
    Format
    * Removed trailing spaces from some files.
    * Fixed not a multiple of 4 spaces indentation in at least one file.
    * Renamed files with spaces in their names, replacing spaces with "_".
    Documentation
    * Additional edits to the README.rst.
    * Reshaped some docstrings into Numpy format.
    timcera committed Apr 30, 2024
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  4. this action is not yet needed, should likely be a simple matrix in th…

    …e other action to test 3.11
    austinorr committed Apr 30, 2024
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Commits on May 1, 2024

  1. OXRX_Class.py -- explicitly set tcginv and len_ to avoid future issue…

    …s with undefined variables, as noted in PR respec#159.
    PaulDudaRESPEC committed May 1, 2024
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  3. utilities.py and io.py -- small improvements to get into the next rel…

    …ease, for GENER operations and outputting mean values
    PaulDudaRESPEC committed May 1, 2024
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Commits on May 3, 2024

  1. Merge pull request respec#159 from timcera/fix

    misc fixes...
    Merging this one in, will have a few touch-ups afterward to resolve this append/concat issue.
    PaulDudaRESPEC authored May 3, 2024
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  2. readUCI.py -- go back to old way fix_df for now

    pyproject.toml -- attempt to add version dependency for pandas
    PaulDudaRESPEC committed May 3, 2024
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Commits on May 4, 2024

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  2. tests/test10/HSP2results fails due to df.append in readUCI line 86; p…

    …inning to allow test; TODO: refactor readUCI for pandas>=2
    austinorr committed May 4, 2024
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  4. use this to manually hide personal files; todo: rm all the personal p…

    …aths at the end of gitignore
    austinorr committed May 4, 2024
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  5. (fix) cleanup the utilities.versions function so that it can't fail a…

    …nyones long-running hspf job
    austinorr committed May 4, 2024
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  6. add pytest apparatus that works with test10, and hopefully others. mu…

    …ch room for improvement
    austinorr committed May 4, 2024
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  8. lint pyproject.toml

    austinorr committed May 4, 2024
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Commits on May 5, 2024

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