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alot,gpgme,notmuch: migrate to `python@3.13` #479462

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Job	Run time
formulae_detect	39s
tap_syntax	2m 50s
tap_syntax (stable)	1m 55s
report_analytics	7s
setup_tests	8s
setup_dep_tests	8s
setup_runners	0s
setup_dep_runners	0s
${{ matrix.name }}	0s
${{ matrix.name }} (deps)	0s
conclusion	1s
	5m 48s