Updated version and changelog

[PaulJonasJost]

• General
  • Documentation (Doc: Fix some typos in model selection example #1140, Doc: pypesto.select xrefs + add select.postprocessors #1146, Doc: Cross-reference fides options documentation #1152, Doc: Fix/update/add/prettify some pypesto.profile documentation #1149)
  • Updated Jupyter Notebooks (Adjusted petab_import.ipynb for a slightly better structure. #1141 )
  • Update code to avoid deprecations (Removed DeprecationWaning of NumPy #1158)
  • Updated maintainers and codeownership (Updated Maintainers. #1171, Codeowner Changes #1170)
• Profile:
  • Fix problem overwrite of profiling (Fix problem overwrite of profiling #1153)
  • Add warning, trying to profile fixed parameter (Add warning, if fixed parameter is supposed to be profiled #1155)
  • ProfileOptions: add some basic integrity checking (ProfileOptions: add some basic integrity checking #1163)
  • Fix pypesto.profile.parameter_profile incorrectly assuming symmetric bounds (Fix pypesto.profile.parameter_profile incorrectly assuming symmetric bounds #1166)
  • Improve pypesto/profile/profile_next_guess.py (Cleanup pypesto/profile/profile_next_guess.py #1167)
• Problem:
  • Add/forward startpoint_kwargs in PetabImporter.create_problem (Add/forward startpoint_kwargs in PetabImporter.create_problem #1135)
  • Support valid AMICI noise distributions that are invalid in PEtab (Support valid AMICI noise distributions that are invalid in PEtab #1157)
  • Fix startpoint sampling for PEtab-derived problems with fixed parameters (Fix startpoint sampling for PEtab-derived problems with fixed parameters #1169)
• Optimize
  • Log traceback in case of exceptions during optimizations (Log traceback in case of exceptions during optimizations #1156)
• Hierarchical:
  • Fix HierarchicalAmiciCalculator.call not setting 'hess' in result (Fix HierarchicalAmiciCalculator.__call__ not setting 'hess' in result #1161)
• Visualization:
  • Fix legend argument checking for waterfall/parameter/history plots (Visualization: Fix legend argument checking for waterfall/parameter/history plots  #1139)

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (b15156e) 82.63% compared to head (f6bbeb3) 46.56%.

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Additional details and impacted files

@@             Coverage Diff              @@
##           develop    #1174       +/-   ##
============================================
- Coverage    82.63%   46.56%   -36.08%     
============================================
  Files          148      148               
  Lines        11799    11799               
============================================
- Hits          9750     5494     -4256     
- Misses        2049     6305     +4256     

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