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Bump com.fasterxml.jackson.dataformat:jackson-dataformat-yaml from 2.16.0 to 2.16.1 #14148

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Bump com.fasterxml.jackson.dataformat:jackson-dataformat-yaml from 2.16.0 to 2.16.1

Bump com.fasterxml.jackson.dataformat:jackson-dataformat-yaml from 2.16.0 to 2.16.1 #14148

Workflow file for this run

.github/workflows/tests.yml at 42b37c0
name: Tests
on:
push:
branches:
- main
- main-release
pull_request:
merge_group:
workflow_dispatch:
env:
SpringerNatureAPIKey: ${{ secrets.SpringerNatureAPIKey }}
AstrophysicsDataSystemAPIKey: ${{ secrets.AstrophysicsDataSystemAPIKey }}
IEEEAPIKey: ${{ secrets.IEEEAPIKey }}
BiodiversityHeritageApiKey: ${{ secrets.BiodiversityHeritageApiKey}}
GRADLE_OPTS: -Xmx4g
JAVA_OPTS: -Xmx4g
concurrency:
group: "${{ github.workflow }}-${{ github.head_ref || github.ref }}"
cancel-in-progress: true
permissions:
pull-requests: write
jobs:
checkstyle:
name: Checkstyle
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'true'
show-progress: 'false'
- name: Set up JDK
uses: actions/setup-java@v4
with:
java-version: 21.0.1
distribution: 'liberica'
- name: Run checkstyle reporter
uses: nikitasavinov/checkstyle-action@master
with:
reporter: github-pr-review
github_token: ${{ secrets.GITHUB_TOKEN }}
checkstyle_config: 'config/checkstyle/checkstyle_reviewdog.xml'
checkstyle_version: '10.3'
- name: Setup Gradle
uses: gradle/gradle-build-action@v2
- name: Run checkstyle using gradle
run: ./gradlew checkstyleMain checkstyleTest checkstyleJmh
openrewrite:
name: OpenRewrite
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'true'
show-progress: 'false'
- name: Set up JDK
uses: actions/setup-java@v4
with:
java-version: 21.0.1
distribution: 'liberica'
- name: Setup Gradle
uses: gradle/gradle-build-action@v2
- name: Run OpenRewrite
run: |
./gradlew rewriteDryRun
modernizer:
name: Modernizer
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'true'
show-progress: 'false'
- name: Set up JDK
uses: actions/setup-java@v4
with:
java-version: 21.0.1
distribution: 'liberica'
- name: Setup Gradle
uses: gradle/gradle-build-action@v2
- name: Run modernizer
run: |
# enable failing of this task if modernizer complains
sed -i "s/failOnViolations = false/failOnViolations = true/" build.gradle
./gradlew modernizer
markdown:
name: Markdown
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'false'
show-progress: 'false'
- name: markdownlint-cli2-action
uses: DavidAnson/markdownlint-cli2-action@v14
with:
globs: |
*.md
docs/**/*.md
changelog:
name: CHANGELOG.md
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'false'
show-progress: 'false'
- name: Lint CHANGELOG.md
run: |
# Install jbang
curl -Ls https://sh.jbang.dev | bash -s - app setup
export PATH=$PATH:$HOME/.jbang/bin
# run heylogs verification
jbang com.github.nbbrd.heylogs:heylogs-cli:0.7.2:bin check CHANGELOG.md > heylogs.txt || true
# improve output
sed -i 's/all-h2-contain-a-version/all-h2-contain-a-version (ignored)/' heylogs.txt
cat heylogs.txt
# exit 1 in case of error
# We have 1 "valid" issue in CHANGELOG.md
grep -q "1 problem" heylogs.txt || exit 1
changelog-unreleased-only:
name: CHANGELOG.md - only unreleased touched
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'false'
show-progress: 'false'
fetch-depth: 0
- name: Install clparse
run: |
curl -LO https://github.com/marcaddeo/clparse/releases/download/0.9.1/clparse-0.9.1-x86_64-unknown-linux-musl.tar.gz
tar xzvf clparse-0.9.1-x86_64-unknown-linux-musl.tar.gz
sudo mv clparse /usr/local/bin/clparse
- name: Check CHANGELOG.md diff
run: |
diff \
<(git show origin/main:CHANGELOG.md | clparse --format=json --separator=– - | jq '.releases[] | select(.version != null)') \
<(git show HEAD:CHANGELOG.md | clparse --format=json --separator=– - | jq '.releases[] | select(.version != null)')
tests:
name: Unit tests
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'true'
show-progress: 'false'
- name: Set up JDK
uses: actions/setup-java@v4
with:
java-version: 21.0.1
distribution: 'liberica'
- name: Setup Gradle
uses: gradle/gradle-build-action@v2
- name: Run tests
run: xvfb-run --auto-servernum ./gradlew check -x checkstyleJmh -x checkstyleMain -x checkstyleTest -x modernizer
env:
CI: "true"
- name: Format failed test results
if: failure()
run: |
sudo apt-get install -qq -y xml-twig-tools xsltproc
scripts/after-failure.sh
databasetests:
name: Database tests
runs-on: ubuntu-latest
services:
postgres:
image: postgres:13-alpine
env:
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
- 5432:5432
# needed because the postgres container does not provide a healthcheck
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'true'
show-progress: 'false'
- name: Set up JDK
uses: actions/setup-java@v4
with:
java-version: 21.0.1
distribution: 'liberica'
- name: Setup Gradle
uses: gradle/gradle-build-action@v2
- name: Run tests on PostgreSQL
run: ./gradlew databaseTest --rerun-tasks
env:
CI: "true"
DBMS: "postgresql"
- name: Shutdown Ubuntu MySQL
run: sudo service mysql stop # Shutdown the Default MySQL, "sudo" is necessary, please not remove it
- name: Start custom MySQL
uses: mirromutth/mysql-action@v1.1
with:
host port: 3800
container port: 3307
character set server: 'utf8'
collation server: 'utf8_general_ci'
mysql version: '8.0'
mysql database: 'jabref'
mysql root password: 'root'
- name: Run tests on MySQL
run: ./gradlew databaseTest --rerun-tasks
env:
CI: "true"
DBMS: "mysql"
guitests:
name: GUI tests
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v4
with:
submodules: 'true'
show-progress: 'false'
- name: Set up JDK
uses: actions/setup-java@v4
with:
java-version: 21.0.1
distribution: 'liberica'
- name: Setup Gradle
uses: gradle/gradle-build-action@v2
- name: Run GUI tests
run: xvfb-run --auto-servernum ./gradlew guiTest
env:
CI: "true"
codecoverage:
name: Code coverage
runs-on: ubuntu-latest
services:
postgres:
image: postgres:10.8
env:
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
- 5432:5432
# needed because the postgres container does not provide a healthcheck
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
steps:
- name: Check secrets presence
id: checksecrets
if: github.ref == 'refs/heads/main'
shell: bash
run: |
if [ "$CODECOV_TOKEN" == "" ]; then
echo "secretspresent=NO" >> $GITHUB_OUTPUT
else
echo "secretspresent=YES" >> $GITHUB_OUTPUT
fi
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
- name: Checkout source
if: github.ref == 'refs/heads/main'
uses: actions/checkout@v4
with:
submodules: 'true'
show-progress: 'false'
- name: Set up JDK
if: github.ref == 'refs/heads/main'
uses: actions/setup-java@v4
with:
java-version: 21.0.1
distribution: 'liberica'
- name: Setup Gradle
uses: gradle/gradle-build-action@v2
- name: Update test coverage metrics
if: (github.ref == 'refs/heads/main') && (steps.checksecrets.outputs.secretspresent == 'YES')
run: xvfb-run --auto-servernum ./gradlew jacocoTestReport
env:
CI: "true"
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
DBMS: "postgresql"
- uses: codecov/codecov-action@v3
if: (github.ref == 'refs/heads/main') && (steps.checksecrets.outputs.secretspresent == 'YES')
with:
token: ${{ secrets.CODECOV_TOKEN }}
# This is https://github.com/marketplace/actions/gradle-wrapper-validation
# It ensures that the jar file is from gradle and not by a strange third party.
gradlevalidation:
name: "Validate Gradle Wrapper"
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
show-progress: 'false'
- uses: gradle/wrapper-validation-action@v1
# This ensures that no git merge conflict markers (<<<, ...) are contained
merge_conflict_job:
name: Find merge conflicts
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
show-progress: 'false'
- name: Merge Conflict finder
uses: olivernybroe/action-conflict-finder@v4.0