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"Rename file" fails silently #2 #4527

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stefanct opened this issue Dec 2, 2018 · 2 comments
Closed

"Rename file" fails silently #2 #4527

stefanct opened this issue Dec 2, 2018 · 2 comments

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@stefanct
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stefanct commented Dec 2, 2018

The "Rename file" feature does not work for me (at least in some instances) in 4.3.1 and current 5.0 master (65a1a03). When that menu entry is clicked the file widget flashes shortly but the context menu remains as if no click happened, and more importantly the file is not renamed but an uncaught exception is thrown:

04:55:15.960 [JavaFX Application Thread] ERROR org.jabref.FallbackExceptionHandler - Uncaught exception occurred in Thread[JavaFX Application Thread,5,main]
java.lang.StringIndexOutOfBoundsException: String index out of range: -4
	at java.lang.String.substring(String.java:1967) ~[?:1.8.0_191]
	at org.jabref.logic.formatter.bibtexfields.RegexFormatter.<init>(RegexFormatter.java:39) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.logic.formatter.Formatters.getFormatterForModifier(Formatters.java:94) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.logic.bibtexkeypattern.BracketedPattern.applyModifiers(BracketedPattern.java:389) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.logic.bibtexkeypattern.BracketedPattern.expandBrackets(BracketedPattern.java:129) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.logic.util.io.FileUtil.createFileNameFromPattern(FileUtil.java:264) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.logic.externalfiles.LinkedFileHandler.getSuggestedFileName(LinkedFileHandler.java:113) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.logic.externalfiles.LinkedFileHandler.findExistingFile(LinkedFileHandler.java:128) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.gui.fieldeditors.LinkedFileViewModel.performRenameWithConflictCheck(LinkedFileViewModel.java:210) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.gui.fieldeditors.LinkedFileViewModel.rename(LinkedFileViewModel.java:203) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
	at org.jabref.gui.fieldeditors.LinkedFilesEditor.lambda$createContextMenuForFile$393(LinkedFilesEditor.java:222) ~[JabRef-5.0-dev--snapshot--2018-11-30--master--65a1a03b9.jar:?]
[…]
	at java.lang.Thread.run(Thread.java:748) [?:1.8.0_191]

The entry used for testing is the following:

@TechReport{Nie2017,
  author      = {Sen Nie and Ling Liu and Yuefeng Du and Wenkai Zhang},
  title       = {Over-the-Air: How we Remotely Compromised the Gateway, {BCM}, and Autopilot {ECU}s of Tesla Cars},
  institution = {Keen Security Lab of Tencent},
  year        = {2017},
  note        = {Blackhat 2018},
  file        = {:./us-18-Liu-Over-The-Air-How-We-Remotely-Compromised-The-Gateway-Bcm-And-Autopilot-Ecus-Of-Tesla-Cars-wp.pdf:PDF},
  url         = {http://i.blackhat.com/us-18/Thu-August-9/us-18-Liu-Over-The-Air-How-We-Remotely-Compromised-The-Gateway-Bcm-And-Autopilot-Ecus-Of-Tesla-Cars-wp.pdf},
}

No matter what I put into Preferences/Import/"File format pattern" in the settings (I tried various things like [year]-[auth]-[title:regex: :_], \year-\author-\format[Replace("\s,_")]{title} and year-author-title obviously not really knowing what I am doing because GUI and documentation issues (to put it mildly)) all with the same result.
This bug might also be related to #3920 and/or #3990 but probably not.

@bdcaf
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bdcaf commented Feb 19, 2019

Might be a long shot - but I had issues with too long file names. See: #3582

@tobiasdiez tobiasdiez added this to the v5.0 milestone Sep 27, 2019
@tobiasdiez
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The syntax for regular expressions in the pattern is the following [year]-[journal:regex("Organization","JabRef")]. This replaces Organization with JabRef.

It would be nice if you could improve the documentation in this regard by heading to https://github.com/JabRef/help.jabref.org/edit/gh-pages/en/BibtexKeyPatterns.md. Thanks!

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e71363e Create geriatrie-et-psychologie-neuropsychiatrie-du-vieillissement.csl (JabRef#4543)
cdd973e APA: Add "personal communication" localization (JabRef#4539)
77bdb6f Create eksploatacja-i-niezawodnosc (JabRef#4531)
7858966 Ready: Update psychological-medicine.csl (JabRef#4536)
264141a Create south-african-actuarial-journal.csl (JabRef#4534)
1fde301 Create pakistan-journal-of-agricultural-sciences.csl (JabRef#4535)
3020eb3 Update hochschule-fur-soziale-arbeit-fhnw.csl (JabRef#4533)
57c8122 Update john-benjamins-publishing-company-linguistik-aktuell-linguistics-today.csl (JabRef#4530)
17c178f Update zeitschrift-fur-internationale-beziehungen.csl (JabRef#4527)
14cf589 Update john-benjamins-publishing-company-linguistik-aktuell-linguistics-today.csl (JabRef#4528)
ca60d6e Update john-benjamins-publishing-company-linguistik-aktuell-linguistics-today.csl (JabRef#4524)
74c5ae9 Update groupe-danthropologie-et-darcheologie-funeraire.csl (JabRef#4526)
999e124 Update associacao-brasileira-de-normas-tecnicas-ufrgs.csl (JabRef#4521)
caabe36 Fix psychiatric services
f50e6f0 Add files via upload (JabRef#4519)
c728658 Create harvard-lancaster-university.csl (JabRef#4520)
11e9ac9 Update instituto-brasileiro-de-informacao-em-ciencia-e-tecnologia-abn… (JabRef#4511)
101b81c Update agriculturae-conspectus-scientificus.csl (JabRef#4510)
615377e Create international-journal-of-population-data-science.csl (JabRef#4517)
fe7cb69 Update university-of-york-apa.csl
f0c7374 Fix AGLC Subsequents
6a8ec90 More Uni Gottingen fixes
9c0f5c6 Update associacao-brasileira-de-normas-tecnicas-ufrgs.csl (JabRef#4460)
22ef83d Update Universitatsmedizin Gottingen
d2f90c9 Create drying-technology.csl (JabRef#4515)
01e339b Create terrorism-and-political-violence.csl (JabRef#4514)
6414c15 Create international-journal-of-hyperthermia.csl (JabRef#4513)
f80b38c Create Sciences Po - Ecole doctorale (note, French) (JabRef#4486)
6a22929 Update instituto-brasileiro-de-informacao-em-ciencia-e-tecnologia-abn… (JabRef#4508)
19c89f5 Create citation-compass-apa-note.csl (JabRef#4500)
fe72590 Chicago fixes & add no-ibid variant (JabRef#4503)
d602477 Update agriculturae-conspectus-scientificus.csl (JabRef#4505)
8a8911b Create mediterranean-journal-of-chemistry.csl (JabRef#4506)
ce77b28 Create conservation-and-society.csl (JabRef#4507)
25a5092 Add IMS journals (JabRef#4496)
a39430e Create rmit-university-harvard.csl (JabRef#4504)
830aa7b Update john-benjamins-publishing-company-collective-volumes.csl (JabRef#4444)
43e9216 Create PHBern IVP (JabRef#4427)
a052fd6 Create Publications du Groupe d'anthropologie et d'archéologie funéra… (JabRef#4499)
a7e12e1 Further improve legal cites for BJPS (JabRef#4497)
744a507 Update agriculturae-conspectus-scientificus.csl (JabRef#4498)
bfffaed APA: Fix sort order for in-text citations (JabRef#4495)
c48d08b Add "Blood Cancer Discovery" for AACR (JabRef#4492)
f628cb2 Medizinische Fakultät Mannheim - Numerisch (JabRef#4490)
77876a4 Improve legal cites for british-journal-of-political-science (JabRef#4488)
3c0c4ee Create apa-with-abstract.csl (JabRef#4487)
a26fa95 Update afte-journal.csl (JabRef#4489)
a7bf678 Create agriculturae-conspectus-scientificus.csl (JabRef#4491)
bb01625 Make ET&C dependent of CSE (JabRef#4483)
b4418ef Create ahmad-ibrahim-kulliyyah-of-laws-international-islamic-universi… (JabRef#4482)
22872d2 APA: Use "et al." in Dutch (JabRef#4484)
5f6c080 Update weed-research.csl (JabRef#4485)
b2fbe15 APA 7th edition (JabRef#4419)
c236ade Create BFCN.csl (JabRef#4481)
25d40cd Update iso690-full-note-cs.csl (JabRef#4480)
5de3904 Update budownictwo-i-architektura-pl.csl (JabRef#4479)
9d9c1da Add files via upload (JabRef#4478)
96200b0 Create instituto-alberto-luiz-coimbra-de-pos-graduacao-e-pesquisa-de-… (JabRef#4476)
8aa9cb0 Update APA journal styles (JabRef#4475)
8549afa Update in-text citation for legal_case for BJPS (JabRef#4470)
71c9e4d Update surgical-neurology-international.csl (JabRef#4472)
a9dac17 Create FUNDING.yml
633e864 Create helsingin-yliopisto-teologinen-tiedekunta-teologian-tyyli.csl (JabRef#4303)
8797c01 Create romanian-iso-690-full-note-with-ibid-romanian.csl (JabRef#4465)
c1519e1 Create assosiation-of-firearms-and-toolmark-examiners.csl (JabRef#4468)
c974e30 Update ieee.csl (JabRef#4467)
a1b7386 Update stale.yml (JabRef#4466)
db549dd Update ruhr-universitat-bochum-lehrstuhl-fur-industrial-sales-and-ser… (JabRef#4462)
2822437 Update .travis.yml (JabRef#4463)
3d72c62 WIP: Adding deprecation notice to DIN1505-2 saying it has been superseded by ISO 690 (JabRef#4454)
1928c2b Fix links after KI update
fad65b7 Turn Kidney International into AMA dependent
6357af5 Update association-for-computing-machinery.csl (JabRef#4459)
eab02ea Create berlin-school-of-economics-and-law-international-marketing-man… (JabRef#3774)
a3e3d97 One more metadata fix
e7d5071 Some Sheldon metadata fixes
3ad4260 Create jurnal-sains-farmasi-dan-klinis.csl (JabRef#4455)
46370dc Add "AIMS Press" journals (JabRef#4458)
57fca07 Update association-for-computing-machinery.csl (JabRef#4456)
6fa90ed Add "Muséum national d'Histoire naturelle" journal styles (JabRef#4457)
7faf0b0 Bundle update
e3c1f85 Create cryptogamie, bryologie (JabRef#4350)
525bba5 Create iso690-full-note-cs.csl (JabRef#4414)
932fad5 Create iso690-author-date-de.csl (JabRef#4344)
ab23108 Create mbts-fullnote-bibliography.csl (JabRef#4363)
c163008 Create associacao-brasileira-de-normas-tecnicas-ibict-full.csl (JabRef#4202)
5586bbc Create associacao-brasileira-de-normas-tecnicas-ibict-initials.csl (JabRef#4203)
483efcb Update ruhr-universitat-bochum-lehrstuhl-fur-industrial-sales-and-service-engineering.csl (JabRef#4442)
92f437d Create independent style for molecular-nutrition-and-food-research.csl… (JabRef#4342)
0d7f481 Update taylor-and-francis-council-of-science-editors-author-date.csl (JabRef#4385)
2b2786b Create ritid-timarit-hugvisindastofnunnar.csl (JabRef#4315)
9534999 Create jsbm.csl (JabRef#4371)
b390657 Changed term on access macro, added rules for bill (JabRef#4407)
95c24f9 Create ecausp-abnt.csl (JabRef#4420)
66ca962 Reindent/reorder
91fefee Create materials-express.csl (JabRef#4445)
ea5d50b Create institut-catholique-de-paris.csl (JabRef#4450)
a4c07e2 Create institut-catholique-de-paris.csl (JabRef#4374)
8a17ae0 Update canadian-geotechnical-journal.csl (JabRef#4447)
7165db0 Update ens-de-lyon-centre-d-ingenierie-documentaire.csl (JabRef#4448)

git-subtree-dir: src/main/resources/csl-styles
git-subtree-split: e106215
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