Mua notebook #998
Merged
Mua notebook #998
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Check out this pull request on See visual diffs & provide feedback on Jupyter Notebooks. Powered by ReviewNB |
|
Thanks @denissemorales ! If you're able to run |
|
I think I did it, but let me know if there are any issues! |
edeno
approved these changes
Jun 5, 2024
edeno
pushed a commit
that referenced
this pull request
Jun 18, 2024
* Give UUID to artifact interval * Add ability to set smoothing sigma in get_firing_rate (#994) * add option to set spike smoothing sigma * update changelog * Add docstrings to SortedSpikesGroup and Decoding methods (#996) * Add docstrings * update changelog * fix spelling --------- Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsfmedicalcenter.org> * Add Common Errors doc (#997) * Add Common Errors * Update changelog * Mua notebook (#998) * documented some of mua notebook * mua notebook documented * documented some of mua notebook * synced py script * Dandi export and read (#956) * compile exported files, download dandiset, and organize * add function to translate files into dandi-compatible names * add table to store dandi name translation and steps to populate * add dandiset validation * add function to fetch nwb from dandi * add function to change obj_id of nwb_file * add dandi upload call and fix circular import * debug dandi file streaming * fix circular import * resolve dandi-streamed files with fetch_nwb * implement review comments * add admin tools to fix common dandi discrepencies * implement tool to cleanup common dandi errors * add dandi export to tutorial * fix linting * update changelog * fix spelling * style changes from review * reorganize function locations * fix circular import * make dandi dependency optional in imports * store dandi instance of data in DandiPath * resolve case of pre-existing dandi entries for export * cleanup bugs from refactor * update notebook * Apply suggestions from code review Co-authored-by: Chris Broz <Chris.Broz@ucsf.edu> * add requested changes from review * make method check_admin_privilege in LabMember --------- Co-authored-by: Chris Broz <Chris.Broz@ucsf.edu> * Minor fixes (#999) * give analysis nwb new uuid when created * fix function argument * update changelog * Fix bug in change in analysis_file object_id (#1004) * fix bug in change in analysis_file_object_id * update changelog * Remove classes for usused tables (#1003) * #976 * Remove notebook reference * Non-daemon parallel populate (#1001) * initial non daemon parallel commit * resolve namespace and pickling errors * fix linting * update changelog * implement review comments * add parallel_make flag to spikesorting recording tables * fix multiprocessing spawn error on mac * move propert --------- Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsf.edu> * Update pipeline column for IntervalList --------- Co-authored-by: Samuel Bray <sam.bray@ucsf.edu> Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsfmedicalcenter.org> Co-authored-by: Chris Broz <Chris.Broz@ucsf.edu> Co-authored-by: Denisse Morales-Rodriguez <68555303+denissemorales@users.noreply.github.com> Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsf.edu>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
added some documentation