Minor fixes #999
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Minor fixes #999
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CBroz1
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Jun 6, 2024
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edeno
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Jun 18, 2024
* Give UUID to artifact interval * Add ability to set smoothing sigma in get_firing_rate (#994) * add option to set spike smoothing sigma * update changelog * Add docstrings to SortedSpikesGroup and Decoding methods (#996) * Add docstrings * update changelog * fix spelling --------- Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsfmedicalcenter.org> * Add Common Errors doc (#997) * Add Common Errors * Update changelog * Mua notebook (#998) * documented some of mua notebook * mua notebook documented * documented some of mua notebook * synced py script * Dandi export and read (#956) * compile exported files, download dandiset, and organize * add function to translate files into dandi-compatible names * add table to store dandi name translation and steps to populate * add dandiset validation * add function to fetch nwb from dandi * add function to change obj_id of nwb_file * add dandi upload call and fix circular import * debug dandi file streaming * fix circular import * resolve dandi-streamed files with fetch_nwb * implement review comments * add admin tools to fix common dandi discrepencies * implement tool to cleanup common dandi errors * add dandi export to tutorial * fix linting * update changelog * fix spelling * style changes from review * reorganize function locations * fix circular import * make dandi dependency optional in imports * store dandi instance of data in DandiPath * resolve case of pre-existing dandi entries for export * cleanup bugs from refactor * update notebook * Apply suggestions from code review Co-authored-by: Chris Broz <Chris.Broz@ucsf.edu> * add requested changes from review * make method check_admin_privilege in LabMember --------- Co-authored-by: Chris Broz <Chris.Broz@ucsf.edu> * Minor fixes (#999) * give analysis nwb new uuid when created * fix function argument * update changelog * Fix bug in change in analysis_file object_id (#1004) * fix bug in change in analysis_file_object_id * update changelog * Remove classes for usused tables (#1003) * #976 * Remove notebook reference * Non-daemon parallel populate (#1001) * initial non daemon parallel commit * resolve namespace and pickling errors * fix linting * update changelog * implement review comments * add parallel_make flag to spikesorting recording tables * fix multiprocessing spawn error on mac * move propert --------- Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsf.edu> * Update pipeline column for IntervalList --------- Co-authored-by: Samuel Bray <sam.bray@ucsf.edu> Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsfmedicalcenter.org> Co-authored-by: Chris Broz <Chris.Broz@ucsf.edu> Co-authored-by: Denisse Morales-Rodriguez <68555303+denissemorales@users.noreply.github.com> Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsf.edu>
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Description
Fixes #990
insert_sessionsin01_Insert_data.ipynbResolves #953
obj_idto files created byAnalysisNwbfile.create()to avoid overlap conflicts.Export.prepare_files_for_export()(Dandi export and read #956)Checklist:
CITATION.cffaltersnippet for release notes.CHANGELOG.mdwith PR number and description.