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Releases: PNNL-Comp-Mass-Spec/protein-coverage-summarizer

Release 1.3.8143

18 Apr 20:43
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Run ProteinCoverageSummarizer_Installer.exe to install the Protein Coverage Summarizer

Use shortcut "PAST Toolkit, Protein Coverage Summarizer" to start the program, or navigate to
C:\Program Files\ProteinCoverageSummarizer and double click ProteinCoverageSummarizerGUI.exe

The ProteinCoverageSummarizer directory also includes a console application named PeptideToProteinMapper.exe for mapping peptides to proteins. That application is also available below in file PeptideToProteinMapper.zip

See the Readme for additional information.

Updates for this release:

  • Replace Ookii.Dialogs.WindowsForms with Ookii.Dialogs.WinForms

Release 1.3.8056

22 Jan 00:02
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Run ProteinCoverageSummarizer_Installer.exe to install the Protein Coverage Summarizer

Use shortcut "PAST Toolkit, Protein Coverage Summarizer" to start the program, or navigate to
C:\Program Files\ProteinCoverageSummarizer and double click ProteinCoverageSummarizerGUI.exe

The ProteinCoverageSummarizer directory also includes a console application named PeptideToProteinMapper.exe for mapping peptides to proteins. That application is also available below in file PeptideToProteinMapper.zip

See the Readme for additional information.

Updates for this release:

  • New versions of PHRPReader and ProteinFileReader

Release 1.3.7993

19 Nov 19:10
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Run ProteinCoverageSummarizer_Installer.exe to install the Protein Coverage Summarizer

Use shortcut "PAST Toolkit, Protein Coverage Summarizer" to start the program, or navigate to
C:\Program Files\ProteinCoverageSummarizer and double click ProteinCoverageSummarizerGUI.exe

The ProteinCoverageSummarizer directory also includes a console application named PeptideToProteinMapper.exe for mapping peptides to proteins. That application is also available below in file PeptideToProteinMapper.zip

See the Readme for additional information.

Updates for this release:

  • Update GetCleanPeptideSequence to optionally remove bracket-based modifications, e.g. [15.9998] or [Acetyl]
  • Use TryParse when reading the ProteinToPep map file
  • New versions of PHRPReader and ProteinFileReader

Release 1.3.7608

31 Oct 00:46
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Run ProteinCoverageSummarizer_Installer.exe to install the Protein Coverage Summarizer

Use shortcut "PAST Toolkit, Protein Coverage Summarizer" to start the program, or navigate to
C:\Program Files\ProteinCoverageSummarizer and double click ProteinCoverageSummarizerGUI.exe

The ProteinCoverageSummarizer directory also includes a console application named PeptideToProteinMapper.exe for mapping peptides to proteins. That application is also available below in file PeptideToProteinMapper.zip

See the Readme for additional information.

Updates for this release:

  • Add support for creating a new version of the input file, but with the protein name appended
    • Includes support for generic tab-delimited text files
  • Fix bug that reported inflated non-unique peptide counts when the input file has peptides listed multiple times for the same scan (due to multiple proteins)

Release 1.3.7394

31 Mar 00:56
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Run ProteinCoverageSummarizer_Installer.exe to install the Protein Coverage Summarizer

Use shortcut "PAST Toolkit, Protein Coverage Summarizer" to start the program, or navigate to
C:\Program Files\ProteinCoverageSummarizer and double click ProteinCoverageSummarizerGUI.exe

The ProteinCoverageSummarizer directory also includes a console application named PeptideToProteinMapper.exe for mapping peptides to proteins. That application is also available below in file PeptideToProteinMapper.zip

See the Readme for additional information.

Updates for this release:

  • Update to .NET 4.7.2
  • Install to C:\Program Files instead of C:\Program Files (x86)

Release 1.1.7068

27 Jun 20:33
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Run ProteinCoverageSummarizer_Installer.exe to install the Protein Coverage Summarizer

Use shortcut "PAST Toolkit, Protein Coverage Summarizer" to start the program, or navigate to
C:\Program Files (x86)\ProteinCoverageSummarizer and double click ProteinCoverageSummarizerGUI.exe

The ProteinCoverageSummarizer directory also includes a console application named PeptideToProteinMapper.exe for mapping peptides to proteins. That application is also available below in file PeptideToProteinMapper.zip

See the Readme for additional information.

Updates for this release:

  • Check for closed or broken SQLite connection

Release v1.1.6831

14 Sep 21:13
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Run ProteinCoverageSummarizer_Installer.exe to install the Protein Coverage Summarizer

Use shortcut "PAST Toolkit, Protein Coverage Summarizer" to start the program, or navigate to C:\Program Files (x86)\ProteinCoverageSummarizer and double click ProteinCoverageSummarizerGUI.exe

The ProteinCoverageSummarizer directory also includes a console application named PeptideToProteinMapper.exe for mapping peptides to proteins.

See the Readme for additonal information.

Updates for this release:

  • Fix intermittent SQLite read errors by removing the deletion call from the clsProteinFileDataCache finalizer
  • Add /Debug and /KeepDB command line switches

Release v1.3.6794

09 Aug 01:46
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Run ProteinCoverageSummarizer_Installer.exe to install the Protein Coverage Summarizer

Use shortcut "PAST Toolkit, Protein Coverage Summarizer" to start the program, or navigate to C:\Program Files (x86)\ProteinCoverageSummarizer and double click ProteinCoverageSummarizerGUI.exe

PeptideToProteinMapper.zip has a console application for mapping peptides to proteins.
See the Readme for details.