don't override random.effects = TRUE #2625
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dlebauer
commented
Jun 3, 2020
robkooper
approved these changes
Jun 3, 2020
|
This one went through quicker than I could comment on it. I don't think this change was a great idea, but if we do keep it I think it is absolutely imperative that the DEFAULT for random effects be set to FALSE, otherwise I predict we're going to get failed runs and nonsensical parameter estimates that are going to drive people crazy. On top of that, I also think we need to be moving toward a place where the meta-analysis is not run by default either, and runs make more use of existing posteriors (especially those coming out of the PDA and HPDA). The database isn't changing quickly these days and I think it makes more sense for the core teams for each model to just update the MA as needed. |
MukulMaheshwari
pushed a commit
to MukulMaheshwari/pecan
that referenced
this pull request
Jul 5, 2020
commit 671027d70d8c04fb74d0c4f1aec5c6a8aa16b288
Merge: 72c5742d5 e11e42782
Author: Mukul Maheshwari <mukul@localhost.localdomain>
Date: Sun Jul 5 16:48:35 2020 +0530
Merge branch 'develop' into book-build-on-actions
updated develop with book actions
commit 72c5742d5b504018b03ec42d344ebac0ef5c1479
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sun Jul 5 14:47:53 2020 +0530
created ci.yml
commit e11e42782b18d537c55f1863cf8b3bf08253a8ec
Merge: bea3f00a6 4f1324a30
Author: Rob Kooper <kooper@illinois.edu>
Date: Fri Jul 3 17:47:45 2020 -0500
Merge pull request #2649 from dlebauer/dev_intro2
Minor changes to DEV-INTRO.md
commit 4f1324a30bfe01e4935661d84cc86a98ad21921c
Merge: bfbdd5aff bea3f00a6
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Fri Jul 3 13:54:53 2020 -0700
Merge branch 'develop' into dev_intro2
commit bea3f00a6cf172d410f7ea88c3449d992d0ee031
Merge: b689d08ed e04d204e8
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Fri Jul 3 13:53:41 2020 -0700
Merge pull request #2648 from KristinaRiemer/update_ed2in_name
Update ED2IN v 2.2.0 name
commit bfbdd5aff7f56949d2c991a9bc14153a2030312f
Author: David LeBauer <dlebauer@arizona.edu>
Date: Fri Jul 3 13:52:06 2020 -0700
Update DEV-INTRO.md
commit 856a7e45a32d26ad5bca982f30968eb9b0e051ae
Author: David LeBauer <dlebauer@arizona.edu>
Date: Thu Jul 2 17:32:09 2020 -0700
Update DEV-INTRO.md
commit e04d204e8545c5636a37f993ef32c90480186a80
Author: Kristina Riemer <kristina.riemer@weecology.org>
Date: Thu Jul 2 12:48:22 2020 -0700
Update ED2IN v 2.2.0 name
commit b689d08ed6dcc325c187c37dabeb6fd77f6032dc
Merge: 16fbbb3c8 766922b3e
Author: Michael Dietze <dietze@bu.edu>
Date: Tue Jun 30 09:32:09 2020 -0400
Merge pull request #2645 from ayushprd/geesmap
GEE - SMAP script
commit 766922b3e7d7ed4d047e3aee2baf346432675e5a
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Tue Jun 30 16:56:03 2020 +0530
added gee2pecan_smap()
commit 16fbbb3c8d20e429552e5d8aa0b88227338f7d65
Merge: 092a43e10 4c7a6e7b8
Author: Michael Dietze <dietze@bu.edu>
Date: Mon Jun 29 15:28:59 2020 -0400
Merge pull request #2610 from robkooper/docker-develop
how to develop using docker
commit 4c7a6e7b8fd41fb4de1952cc86e9ffb6cf2172a5
Merge: 1e43abe79 092a43e10
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon Jun 29 13:18:21 2020 -0500
Merge branch 'develop' into docker-develop
commit 1e43abe79fbdfc9b8bf90b0b479093a73e35b4c9
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon Jun 29 12:23:44 2020 -0500
missing quote
commit d9cde51c408eee225b2e0b8728e3acec07190620
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon Jun 29 08:59:40 2020 -0500
more explicit about commands for windows/linux/mac
commit 092a43e10b7a8e3184742311b867f08c613aa4ae
Merge: d1a30bef4 88a487526
Author: Michael Dietze <dietze@bu.edu>
Date: Sun Jun 28 18:13:20 2020 -0400
Merge pull request #2496 from PecanProject/biocro_annual_grass
no carbon storage across years for annual grasses in BioCro
commit 88a487526f3d79b8ebfb66beeac3d5e1fd4584ef
Merge: a868addb4 d1a30bef4
Author: Michael Dietze <dietze@bu.edu>
Date: Sun Jun 28 17:14:26 2020 -0400
Merge branch 'develop' into biocro_annual_grass
commit d1a30bef47bdbb370453ae4fdbdec195a0470945
Merge: 46f60f9b9 dcf27a1e9
Author: Michael Dietze <dietze@bu.edu>
Date: Sun Jun 28 17:14:12 2020 -0400
Merge pull request #2643 from infotroph/bookdown-workaround
Fix for failing documentation build
commit a868addb471e5188c370f97c64d93c551f2e893c
Author: runner <runner@Mac-1501.local>
Date: Sun Jun 28 09:29:08 2020 +0000
automated syle update
commit 07ec40c5e2135df64aec733c2002ffd7723eda53
Merge: ad7e98384 46f60f9b9
Author: Chris Black <chris@ckblack.org>
Date: Sun Jun 28 11:22:11 2020 +0200
Merge branch 'develop' into biocro_annual_grass
commit dcf27a1e9cca8495e25be2fbcbca6a0f26747265
Author: Chris Black <chris@ckblack.org>
Date: Sun Jun 28 09:58:51 2020 +0200
work around "Input files not all in same directory, please supply explicit wd" from bookdown 0.20
commit 46f60f9b9a2016864f557c2f1b24a166c09af1ec
Merge: 013bc2059 c62d28330
Author: Michael Dietze <dietze@bu.edu>
Date: Sat Jun 27 22:29:07 2020 -0400
Merge pull request #2631 from tezansahu/api_1
API endpoints for ping, models, workflows & runs (with authentication)
commit c62d2833009cf485dd8b32795107ec545c40f167
Merge: c18023bc8 88188abd6
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Sat Jun 27 16:34:55 2020 -0500
Merge branch 'api_1' of github.com:tezansahu/pecan into api_1
commit c18023bc88f2865da30ab5f653773a5ed7afdccc
Merge: 71e6fb72f 013bc2059
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Sat Jun 27 16:33:55 2020 -0500
Merge branch 'develop' of https://github.com/PecanProject/pecan into api_1
commit 71e6fb72f6c23f5a4cce8528b6f558131b2a0670
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Sat Jun 27 21:33:39 2020 +0000
updated swagger docs link in documentation & readme
commit 88188abd6d2db53ce83b35f8290a080926993806
Merge: acf68510b 013bc2059
Author: Michael Dietze <dietze@bu.edu>
Date: Sat Jun 27 17:33:18 2020 -0400
Merge branch 'develop' into api_1
commit 013bc2059784942a80d392d04205621410778049
Merge: d30d5c202 b7de3a672
Author: Michael Dietze <dietze@bu.edu>
Date: Sat Jun 27 17:23:27 2020 -0400
Merge pull request #2569 from rahul799/styler-workflow
Styler workflow
commit b7de3a672bed0e3901488c0f3ef5161e976b9db2
Author: Chris Black <chris@ckblack.org>
Date: Sat Jun 27 22:39:18 2020 +0200
Update .github/workflows/styler-actions.yml
commit acf68510bd6d5688b0cd0cb1e0717dd4ef1d0f48
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Sat Jun 27 19:42:53 2020 +0000
updated docs with examples
commit c4b1bd17f80eb7a09aa5a563b5b6359bc25c8e65
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Sat Jun 27 22:37:23 2020 +0530
Update .github/workflows/styler-actions.yml
Co-authored-by: Chris Black <chris@ckblack.org>
commit 5f7617045ece7546ae751995e2044a489adfda83
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Sat Jun 27 22:37:10 2020 +0530
Update .github/workflows/styler-actions.yml
Co-authored-by: Chris Black <chris@ckblack.org>
commit 3464bffad024cda5f6baeb4c8e8129fb3195646b
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Sat Jun 27 22:36:55 2020 +0530
Update .github/workflows/styler-actions.yml
Co-authored-by: Chris Black <chris@ckblack.org>
commit 932f931bb5a8ae78cba2f1a69ca474ef99d8a15e
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 18:37:40 2020 +0530
updated bookdown bug
commit 63e45d0d65dcdf53fa5f5b1b74086b7fc25a1afc
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 17:15:31 2020 +0530
Update book.yml
commit 10f9b15dc2083036de6d4017cdf4d9eb560554f2
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 17:00:26 2020 +0530
Update book.yml
commit cf24ccb05732d155aa4b301c76725dd0eee7ee6f
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 16:43:19 2020 +0530
Update book.yml
commit 90c985220e60018d53aa3551f8f8f3663c7e9eb7
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 16:37:03 2020 +0530
Update book.yml
commit 56a97a83707d330c27feb0543d50906b1edc4701
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 16:01:35 2020 +0530
Update book.yml
commit b59e33d0f32418201e68222abdc0682376a0af11
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 13:34:50 2020 +0530
Update book.yml
commit 84bef4753ded00715c04805842d103e1dd4870b1
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 12:53:46 2020 +0530
Update book.yml
commit ef3ceadeccb29ce7eebb34190033f45273393fe1
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 12:47:10 2020 +0530
Update book.yml
commit 691b82346762327ea338edd9d8770baeda86361b
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 12:41:29 2020 +0530
Update book.yml
commit 89c51eaaafb2aa3c0a717d371ee5f3933150504a
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 27 11:52:19 2020 +0530
updated tags field
commit 8626151d3374afc5a36a34cca70c42ada177a76a
Merge: 17a00e23d d30d5c202
Author: Chris Black <chris@ckblack.org>
Date: Fri Jun 26 21:09:54 2020 +0200
Merge branch 'develop' into styler-workflow
commit d107248adbb55e5795f025820d551e3bf843ef31
Merge: b0e2f3b93 61829fe3d
Author: David LeBauer <dlebauer@arizona.edu>
Date: Thu Jun 25 14:44:08 2020 -0700
Merge branch 'docker-develop' of https://github.com/robkooper/pecan into pr/2610
commit b0e2f3b935da3aa716a69bbce8ab07bbf887f9d2
Author: David LeBauer <dlebauer@arizona.edu>
Date: Thu Jun 25 14:44:02 2020 -0700
Update DEV-INTRO.md
commit b3b811fd6ddfed2adeaee145010fc0c9f42c9320
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Thu Jun 25 17:58:29 2020 +0000
api folder restructuring
commit 15851f87701874d196e5454ec6e052442bcb3b11
Merge: 3ca09483f d30d5c202
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Tue Jun 23 22:17:04 2020 -0500
Merge branch 'develop' of https://github.com/PecanProject/pecan into api_1
commit 3ca09483fc575553d5ce053547f652d534aec823
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Tue Jun 23 18:37:05 2020 +0000
API documentation for GET endpoints involving models, workflows, runs & general host details
commit d30d5c2026858ed55a931303f25110b99dbab2e4
Merge: d7cbc6a68 a84d5b1fd
Author: Michael Dietze <dietze@bu.edu>
Date: Mon Jun 22 10:11:11 2020 -0400
Merge pull request #2641 from infotroph/met-process-fix-con
Pass correct object to query.format.vars
commit 581b4b2c96a2f71b57cff1208a591cd8d7f45d90
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Mon Jun 22 12:29:28 2020 +0000
docker setup for api
commit a84d5b1fda2d37494b4f12d223347943a470f110
Author: Chris Black <chris@ckblack.org>
Date: Sat Jun 20 21:17:52 2020 +0200
src_postgres is deprecated
commit 32e95940cbd85d8ccf4efb78774695ae2bd3b366
Author: Chris Black <chris@ckblack.org>
Date: Fri Jun 19 22:40:16 2020 +0200
pass connection not list (plus misc roxygen fixes)
commit d7cbc6a68f4ee66489348c1f2646fe390c94ec86
Merge: b1c3f939b be7098f04
Author: Michael Dietze <dietze@bu.edu>
Date: Fri Jun 19 08:11:40 2020 -0400
Merge pull request #2637 from ayushprd/geelai
LAI script for remote data module
commit be7098f045c1c650b2c8caa0133cf696b917358e
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Fri Jun 19 16:38:14 2020 +0530
unused import
commit 3cf8cd7fc7e0c34e839235bad44e49c1055f60c9
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Fri Jun 19 16:28:15 2020 +0530
added remote_process v1
commit ac23b024e0b5f158ca507b91b7b3c0168d440170
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Thu Jun 18 23:51:46 2020 +0530
Update book.yml
commit f4a360617f77bcccc05fa96ff0a3a348d69c82a5
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Thu Jun 18 23:44:46 2020 +0530
updated auth and build jobs
commit 81bd7a357c804460d27c2be7501312f10bff645f
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Thu Jun 18 15:35:44 2020 +0000
minor bugfix in dbHostInfo
commit 8d7e28f26d08b96a09de0282e500a843257bb836
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Thu Jun 18 14:59:03 2020 +0000
status endpoint uses env vars
commit 24e2184b59423eb8bc0d9c179ce15a8aa3b17681
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Thu Jun 18 13:26:51 2020 +0000
added status endpoint & modified dbHostInfo()
commit 3ee0d5a88bda65adb619c090d059e2841bc55c30
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Thu Jun 18 11:27:51 2020 +0530
added bands2ndvi
commit 390d1839b1443c06fb32d64dd06c110780301c03
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Thu Jun 18 11:26:25 2020 +0530
added bands2lai_snap
commit 22c5ce12bd6772a48ec7a9e074736b40cc569b33
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Thu Jun 18 11:24:55 2020 +0530
added gee2pecan_bands
commit e15bf8de2e038af9459b409bbd13a7cb41bd4717
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Thu Jun 18 11:22:27 2020 +0530
removed GPP and other unused functions
commit 1921baa7797fd5cd007234ba693a9bcc1b94ff28
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Tue Jun 16 17:35:39 2020 +0530
script to calculate LAI from gee
commit c5d7169f0506df54287866ec65af443f7b7abe46
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Tue Jun 16 17:34:26 2020 +0530
added SNAP biophyscial processor
Co-authored-by: Olli Nevalainen <olli.nevalainen.fmi@gmail.com>
commit b1c3f939bc38338a4e23501796ab04762907e806
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Tue Jun 16 16:44:12 2020 +0530
Sentinel 2 NDVI script for remote data module (#2634)
* added satellitetools
* added s2ndvi
* added test file
* removed satellitetool's old functions
* Apply suggestions from code review (fixes in docs)
Co-authored-by: istfer <fer.istem@gmail.com>
* added example run and dependencies required
* moved test file to satellitetools
* updated docs
* minor fixes
* removed pycache
Co-authored-by: istfer <fer.istem@gmail.com>
Co-authored-by: Michael Dietze <dietze@bu.edu>
commit cdc18ca2d995f94a8888a837a659b9a4a067234f
Merge: 4467cf15f 630bd5857
Author: Michael Dietze <dietze@bu.edu>
Date: Mon Jun 15 15:49:00 2020 -0400
Merge pull request #2636 from PecanProject/model2netcdf_version_detection
Improve checking for output variable names in model2necdf.ED2
commit 630bd5857a52dd6284eeb1f28c8f4401846529db
Merge: d098bc36b 9b4b2f01d
Author: mccabete <tmccabe@pecan-test.bu.edu>
Date: Mon Jun 15 13:13:58 2020 -0400
Merge branch 'model2netcdf_version_detection' of https://github.com/pecanproject/pecan into model2netcdf_version_detection
commit d098bc36bc173bda507c89e1c44437427848b475
Author: mccabete <tmccabe@pecan-test.bu.edu>
Date: Mon Jun 15 13:12:46 2020 -0400
fix if statments so warning will be triggered
commit 9b4b2f01d4b42a7b51ae987dba6f75ee78744477
Author: Tess McCabe <tmccabe@bu.edu>
Date: Mon Jun 15 10:14:56 2020 -0400
Update CHANGELOG.md
commit 3a24ca1121bfc7775dafe9ad2c6465321c6e5ad4
Author: mccabete <tmccabe@pecan-test.bu.edu>
Date: Mon Jun 15 09:29:50 2020 -0400
Improve checking for output variable names
commit c3d9944f7cf9681bdc58f6d269c09d333da8f98b
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Mon Jun 15 16:26:22 2020 +0530
Update book.yml
commit 907d9e48be811299359471c3b865d923120bd1ad
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Mon Jun 15 16:19:39 2020 +0530
Update book.yml
commit 6ff92f0d33bc4cb13d76a99a1d3ffd62ea3611b4
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Mon Jun 15 15:01:45 2020 +0530
Update book.yml
commit 3f3f93f204354ec70ae053ea8a6aad67609c70f7
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Mon Jun 15 14:55:45 2020 +0530
Update book.yml
commit 64c623fd29195458c197d43a0dbf0c543d725f92
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sun Jun 14 23:53:14 2020 +0530
Update book.yml
commit 299c240277d616463979cdbe09ef57731b8167fc
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Sun Jun 14 03:57:33 2020 -0500
converted all betydb calls to dplyr
commit bd912a6d8a400d67efbe2921f5c7939a21816502
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sun Jun 14 11:52:26 2020 +0530
Update book.yml
commit 44b39c6708b4d85bc88ab687890a50afbd21444e
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sun Jun 14 11:46:00 2020 +0530
Update book.yml
commit 6d33db32b6ef22d03dd686d140993cd7841b6c46
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 23:34:42 2020 +0530
Update book.yml
commit 243471dc18df35a24cb67d24e2a055a92b56a902
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 23:20:02 2020 +0530
Update book.yml
commit c46047145e3e6461cca1be264e8af9f4b0778157
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 23:16:24 2020 +0530
Update book.yml
commit aab4efe080e12dcb5021da617ef9bd8f36628678
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 22:52:57 2020 +0530
Update book.yml
commit b501fbca8215d278036b487da20ffe6a6de87ecc
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 22:49:16 2020 +0530
updated book.yml
commit 40ad66148753a6d78baf7b8872ad754f551c804d
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 17:58:53 2020 +0530
Update book.yml
commit 3247d4f03bb22c30de774e1d0a2422838e161d61
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 17:19:33 2020 +0530
Update book.yml
commit e243af6547826db8c7d7e158c910187e5d5b73e0
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 17:14:05 2020 +0530
Update book.yml
commit 6f8b0b5ac428180a571d33cfa425e971ffe6cd9a
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 13 16:52:35 2020 +0530
Update book.yml
commit 6bcb0f2435cc51b6b9bd97c054e2081b78ce3518
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Sat Jun 13 00:05:05 2020 -0500
replaces bety connection pipeline with
commit 61829fe3ddeac59f771ab1a26e5382ce00b33001
Merge: e95c7c144 4467cf15f
Author: Rob Kooper <kooper@illinois.edu>
Date: Fri Jun 12 23:06:09 2020 -0500
Merge remote-tracking branch 'upstream/develop' into docker-develop
commit eace0cebd7f3ba7d0815d83924388bbab200a1f0
Merge: 154d961d2 4467cf15f
Author: Tezan Sahu <31898274+tezansahu@users.noreply.github.com>
Date: Sat Jun 13 09:20:28 2020 +0530
Merge branch 'develop' into api_1
commit 4467cf15f967ef6426ac226c8e058e2b1401eefd
Merge: d0648000c d6cdebe9f
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu Jun 11 18:02:05 2020 -0500
Merge pull request #2632 from robkooper/betyconnect-env-vars
use get_postgres_envvars in betyConnect
commit d6cdebe9fad9666700751fd4785b8a699498f77f
Merge: ce51edd78 d0648000c
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu Jun 11 09:27:56 2020 -0500
Merge branch 'develop' into betyconnect-env-vars
commit ce51edd782c6100eee13253472dfda1462b727bd
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu Jun 11 09:27:47 2020 -0500
Update CHANGELOG.md
Co-authored-by: Chris Black <chris@ckblack.org>
commit 94c2b2cd2c0a426cdd44cda3e2202af729168c34
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu Jun 11 09:27:36 2020 -0500
Update base/db/R/query.dplyr.R
Co-authored-by: Chris Black <chris@ckblack.org>
commit d0648000c59e5367d9c5e9cec0aaf4194da0ee62
Merge: 5ee572b2e 55339f32b
Author: Michael Dietze <dietze@bu.edu>
Date: Thu Jun 11 08:06:26 2020 -0400
Merge pull request #2617 from tezansahu/develop
updated steps used for installing pecan using docker
commit 7a9f75c040fb7bbcde3efc9eaf0890138eb58bb2
Merge: 7877d59a0 5ee572b2e
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed Jun 10 20:55:55 2020 -0500
Merge branch 'develop' into betyconnect-env-vars
commit 7877d59a0b0be873f8525ce4af7c846ebfb312b5
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed Jun 10 18:51:29 2020 -0500
use get_postgres_envvars in betyConnect
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Wed Jun 10 23:36:27 2020 +0530
Update book.yml
commit 154d961d23bce1b844ae0639efce0dd50c83bb9a
Merge: aac4d2adf 5ee572b2e
Author: Tezan Sahu <31898274+tezansahu@users.noreply.github.com>
Date: Wed Jun 10 22:01:41 2020 +0530
Merge branch 'develop' into api_1
commit aac4d2adf7f7632d09a4a973cf61dc6221ab828a
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Tue Jun 9 16:51:32 2020 +0000
added endpoints for runs
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Merge: 193e90283 5ee572b2e
Author: Michael Dietze <dietze@bu.edu>
Date: Tue Jun 9 09:13:01 2020 -0400
Merge branch 'develop' into develop
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Merge: 654539f98 691e59970
Author: Michael Dietze <dietze@bu.edu>
Date: Tue Jun 9 09:12:07 2020 -0400
Merge pull request #2622 from istfer/replace_tmvtnorm
Replace tmvtnorm
commit 306024dea93dde365558cf34b1f9a9ab1709301e
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Tue Jun 9 02:57:04 2020 +0000
documentation bugfixes
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Tue Jun 9 00:43:40 2020 +0530
Update book.yml
commit 8d26b00792a0b93ecb48b667b4643ba0fcc2dbb6
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Tue Jun 9 00:40:28 2020 +0530
Update book.yml
commit 245ef87b79fca2755d5e3938851dc1970b6cf691
Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Tue Jun 9 00:36:43 2020 +0530
Update book.yml
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Tue Jun 9 00:12:35 2020 +0530
Update book.yml
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Mon Jun 8 23:50:15 2020 +0530
updated remote repo
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Date: Mon Jun 8 22:17:16 2020 +0530
updated repo token
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Mon Jun 8 19:19:09 2020 +0530
Update book.yml
commit 691e599704728db2ed173d6478245240c3a602c2
Merge: 73eb2990c 654539f98
Author: Michael Dietze <dietze@bu.edu>
Date: Mon Jun 8 09:46:16 2020 -0400
Merge branch 'develop' into replace_tmvtnorm
commit 654539f98388fcba9dbc16fba56df531cdeef1e5
Merge: 10239e62f c7eef5ac6
Author: Michael Dietze <dietze@bu.edu>
Date: Mon Jun 8 09:45:14 2020 -0400
Merge pull request #2630 from ayushprd/develop
changed ic.process to ic_process
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Mon Jun 8 18:18:18 2020 +0530
Update book.yml
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Merge: dcbdc5cba 10239e62f
Author: Michael Dietze <dietze@bu.edu>
Date: Mon Jun 8 07:02:29 2020 -0400
Merge branch 'develop' into develop
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Merge: 301a15e78 050b4c1cf
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Mon Jun 8 15:32:15 2020 +0530
Merge pull request #1 from ayushprd/ic-doc-changes
changed ic.process to ic_process
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Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Mon Jun 8 15:27:51 2020 +0530
changed ic.process to ic_process
commit f32b2dda9983ce05a2e87ea5f57c3fc55643c9cc
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Date: Sun Jun 7 14:50:06 2020 +0000
added pagination for workflows endpoint
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Author: Tezan Sahu <tezansahu@gmail.com>
Date: Sun Jun 7 12:01:46 2020 +0000
added endpoint to get details of workflow by id
commit 182ff64cf4ba5af84cf62424adbf0c9b5eb6065a
Author: Tezan Sahu <tezansahu@gmail.com>
Date: Sun Jun 7 10:56:08 2020 +0000
added api to filter workflow by model/site id [w/o pagination]
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Date: Sun Jun 7 10:55:24 2020 +0000
db connections closed
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Date: Sun Jun 7 05:33:52 2020 +0000
removed importing of dependencies
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Date: Sat Jun 6 15:18:25 2020 -0500
directory refactoring
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Date: Sat Jun 6 14:51:56 2020 -0500
added ping & model api, authentication & swagger yaml
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updated git repo changes
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 6 12:57:09 2020 +0530
Update book.yml
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 6 12:46:03 2020 +0530
Update book.yml
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Author: MukulMaheshwari <31155543+MukulMaheshwari@users.noreply.github.com>
Date: Sat Jun 6 12:41:36 2020 +0530
Update book.yml
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Date: Sat Jun 6 12:35:23 2020 +0530
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Date: Thu Jun 4 20:04:40 2020 +0530
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changes
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Date: Thu Jun 4 14:42:40 2020 +0530
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Date: Thu Jun 4 14:35:07 2020 +0530
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updated container image
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Author: istfer <fer.istem@gmail.com>
Date: Thu Jun 4 03:49:41 2020 -0400
Merge branch 'develop' of github.com:PecanProject/pecan into replace_tmvtnorm
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Merge: 7dc0ffe1f 10239e62f
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed Jun 3 17:31:22 2020 -0700
Merge branch 'develop' into develop
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Merge: bc252328f 10239e62f
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed Jun 3 17:29:08 2020 -0700
Merge branch 'develop' into docker-develop
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Merge: d39e83ca1 6562b58f4
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed Jun 3 17:28:31 2020 -0700
Merge pull request #2625 from dlebauer/develop
don't override random.effects = TRUE
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Author: David LeBauer <dlebauer@arizona.edu>
Date: Wed Jun 3 15:09:15 2020 -0700
Update modules/meta.analysis/R/meta.analysis.R
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Date: Wed Jun 3 15:47:53 2020 -0500
updates to doc and speedups
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Merge: dc27dd82d d39e83ca1
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed Jun 3 13:00:59 2020 -0700
Merge branch 'develop' into biocro_annual_grass
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Author: David LeBauer <dlebauer@arizona.edu>
Date: Wed Jun 3 13:00:32 2020 -0700
Update CHANGELOG.md
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Date: Wed Jun 3 12:48:27 2020 -0700
don't override random.effects = TRUE
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updated container image
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update changelog
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Date: Tue Jun 2 16:51:32 2020 +0530
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Date: Tue Jun 2 16:51:19 2020 +0530
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Date: Tue Jun 2 16:51:05 2020 +0530
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Date: Tue Jun 2 16:50:15 2020 +0530
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Date: Tue Jun 2 16:43:22 2020 +0530
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Date: Tue Jun 2 16:33:33 2020 +0530
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Date: Tue Jun 2 10:10:29 2020 +0200
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Date: Tue Jun 2 10:48:46 2020 +0530
Update styler-actions.yml
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Author: Rob Kooper <kooper@illinois.edu>
Date: Fri May 29 14:24:50 2020 -0500
Update DEV-INTRO.md
Co-authored-by: istfer <fer.istem@gmail.com>
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Author: Rob Kooper <kooper@illinois.edu>
Date: Fri May 29 14:24:31 2020 -0500
Update DEV-INTRO.md
Co-authored-by: istfer <fer.istem@gmail.com>
commit d5cb02d3518684fc59e0954ab5f5862dbffd8136
Author: Rob Kooper <kooper@illinois.edu>
Date: Fri May 29 14:24:03 2020 -0500
Update DEV-INTRO.md
Co-authored-by: istfer <fer.istem@gmail.com>
commit 109cd7658860bf23f08e468ab9c2ea96ff2d6e5d
Author: Rob Kooper <kooper@illinois.edu>
Date: Fri May 29 14:23:10 2020 -0500
Update DEV-INTRO.md
Co-authored-by: Kristina Riemer <reamy316@aim.com>
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Author: Rob Kooper <kooper@illinois.edu>
Date: Fri May 29 14:22:51 2020 -0500
Update DEV-INTRO.md
Co-authored-by: istfer <fer.istem@gmail.com>
commit 07e1a1504f5fef00f203af176aacfdff845bb285
Author: Rob Kooper <kooper@illinois.edu>
Date: Fri May 29 14:21:08 2020 -0500
Update DEV-INTRO.md
Co-authored-by: istfer <fer.istem@gmail.com>
commit ce642787971130de46192d787d4ae94549ec6492
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Date: Thu May 28 02:29:54 2020 -0500
started creating api endpoints; ping ready
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Date: Wed May 27 16:05:08 2020 -0500
use copy instead of rename
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Date: Thu May 28 00:56:13 2020 +0530
modified link for pecan releases
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Date: Wed May 27 08:36:41 2020 +0530
modified image for env file & added warning
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Date: Tue May 26 18:48:37 2020 -0500
more updates
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Date: Tue May 26 20:55:44 2020 +0530
Update 01_install_pecan.Rmd
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Date: Tue May 26 20:42:50 2020 +0530
fixes to issues in the docs
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Date: Tue May 26 20:40:36 2020 +0530
fixes to issues in the docs
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Date: Tue May 26 20:34:12 2020 +0530
Update book_source/02_demos_tutorials_workflows/01_install_pecan.Rmd
Co-authored-by: istfer <fer.istem@gmail.com>
commit ee98276e998c7dfe8f3202dcf7f350d610a40b19
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Date: Tue May 26 08:11:46 2020 +0530
updated steps used for installing pecan using docker
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Author: Rob Kooper <kooper@illinois.edu>
Date: Sun May 24 11:26:10 2020 -0500
Merge branch 'docker-develop' of github.com:robkooper/pecan into docker-develop
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Date: Sun May 24 11:26:02 2020 -0500
fix error message
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Author: Rob Kooper <kooper@illinois.edu>
Date: Sun May 24 11:25:24 2020 -0500
update sipnet docker test fixes #2615
commit d39e83ca1d3236cb05b101ed8092b0d57c93a3ee
Merge: bdea9c74e ca8cb7ba7
Author: Rob Kooper <kooper@illinois.edu>
Date: Sun May 24 10:11:46 2020 -0500
Merge pull request #2616 from istfer/fix_SA_typo
Fixing small typos that casuses errors for SA runs
commit ca8cb7ba7f35f58601dc0f52879f73dc91f0d39c
Author: istfer <fer.istem@gmail.com>
Date: Sun May 24 10:37:16 2020 -0400
remove extra
commit 656d8e6f3b2878c2ff79d8e563cad33730fa471a
Author: istfer <fer.istem@gmail.com>
Date: Sun May 24 09:22:47 2020 -0400
fix typo
commit 2bb5b1a2c16584dacc03d10f3035752a6097c1aa
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Sun May 24 10:19:14 2020 +0530
Update styler-actions.yml
commit f0771aaf6ca9cfc928ce65e7b25033d25a26d7b1
Author: Rob Kooper <kooper@illinois.edu>
Date: Tue May 19 07:58:54 2020 -0500
Update DEV-INTRO.md
Co-authored-by: Chris Black <chris@ckblack.org>
commit 1910db876a7f0689735757cb635d41f0d4812291
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon May 18 17:40:51 2020 -0500
fix cp command
commit bdea9c74e6ce9ff639a2c2dcbc21ded14c870fb8
Merge: 948d6326f 6b22d2eb9
Author: Michael Dietze <dietze@bu.edu>
Date: Mon May 18 17:23:45 2020 -0400
Merge pull request #2605 from kyclark/ed2.dockerfile
setting the default values to match docker.sh so this will build
commit e627e3fc32bb0a42d4b93fcddcc90ce797d4452d
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon May 18 15:13:28 2020 -0500
Update DEV-INTRO.md
Co-authored-by: istfer <fer.istem@gmail.com>
commit 6b22d2eb96b498914aa09c53d5b41e9f0732717d
Merge: da17fad70 948d6326f
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon May 18 12:58:21 2020 -0500
Merge branch 'develop' into ed2.dockerfile
commit 948d6326f1675439cf1626a8cfb163d9e28e26af
Merge: faaf9cddd 691025f02
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon May 18 12:57:17 2020 -0500
Merge pull request #2601 from PecanProject/docker-quickstart-docs
add a true docker quickstart
commit 691025f028d894fe1ecd4916a87911f0c81c5b03
Merge: 6a3fe92c5 faaf9cddd
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon May 18 11:49:13 2020 -0500
Merge branch 'develop' into docker-quickstart-docs
commit 9989ab40236390ce018feb8542f7955cb312c7be
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon May 18 11:32:48 2020 -0500
more fixes based on discussion in #2572
commit 5eeeb60f91ca4b961e1925556bffd367c1cecbdc
Merge: 5ba4df45c faaf9cddd
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon May 18 10:08:10 2020 -0500
Merge remote-tracking branch 'upstream/develop' into docker-develop
commit faaf9cddddbcf9970f16d7e720884dad4a6444d0
Merge: 4e84f1ddd b34a4cb8d
Author: Michael Dietze <dietze@bu.edu>
Date: Mon May 18 09:25:05 2020 -0400
Merge pull request #2611 from ayushprd/2520
Fixed not triggering of "All values bad" in call_MODIS
commit b34a4cb8df61ef6f9cb40c5f5eceb4c990f55f5c
Merge: c02c2f009 4e84f1ddd
Author: Michael Dietze <dietze@bu.edu>
Date: Mon May 18 08:45:52 2020 -0400
Merge branch 'develop' into 2520
commit 4e84f1ddda484406da26c9925d061ee3f6f81333
Merge: 7f290ce99 04236fc07
Author: Michael Dietze <dietze@bu.edu>
Date: Mon May 18 08:45:27 2020 -0400
Merge pull request #2613 from istfer/fix-db-dbsync-crash
add .sh
commit 04236fc07023b3cd22a4f18579a5dd5f6d36d83f
Author: istfer <fer.istem@gmail.com>
Date: Mon May 18 03:37:37 2020 -0400
add .sh
commit 5ba4df45cc8fa45fbddd64673801a68c39dd80aa
Merge: 236241366 6591e19f6
Author: Rob Kooper <kooper@illinois.edu>
Date: Sat May 16 10:41:26 2020 -0500
Merge branch 'docker-develop' of github.com:robkooper/pecan into docker-develop
commit 236241366445f44e14b889f92cec1f588cb042cd
Author: Rob Kooper <kooper@illinois.edu>
Date: Sat May 16 10:41:24 2020 -0500
added some text to clarify things based on feedback from @istfer
commit 6591e19f61dd1693bb47f2ac83dcc326f4b51a6d
Author: Rob Kooper <kooper@illinois.edu>
Date: Fri May 15 09:59:59 2020 -0500
Update DEV-INTRO.md
Co-authored-by: istfer <fer.istem@gmail.com>
commit 40a15e117ff662d1b8b2c34dab1798b8d5085b8e
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 14 23:18:35 2020 -0500
few more tweaks
commit c30e5f6dd0e71165ca1371c5e66cfcc9a54cb8ff
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 14 23:12:22 2020 -0500
fixes based on demo today
commit 62b900c76100dca60f2642c88f2c170be680291f
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 14 16:53:12 2020 -0500
Update DEV-INTRO.md
Co-authored-by: David LeBauer <dlebauer@arizona.edu>
commit a55a4f45980245eb8560ba256a91529c2dc4cf19
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 14 16:53:02 2020 -0500
Update DEV-INTRO.md
Co-authored-by: istfer <fer.istem@gmail.com>
commit c02c2f009b1732ef03ca8208742353300d4aeef6
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Thu May 14 15:03:46 2020 +0530
removed !(is.null(good))
commit 01d0596546ca4c056a761f9305d7ab249eb182ac
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 13 23:49:16 2020 -0500
add note about docker-compose.override.yml
commit 63d87af67b3e1250121e88a9120f16d9c6e4c094
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 13 23:33:02 2020 -0500
update CHANGELOG
commit 3e3df92c3ca78234fd58fb0e36df86f77a5fe7b5
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 13 23:28:22 2020 -0500
how to develop using docker
commit 7f290ce9943ce4bf23f0a3e8181d00e9fe9920db
Merge: ea5a57c6f 573dfd57d
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 13 17:14:27 2020 -0500
Merge pull request #2608 from robkooper/fix-db-dbsync-build
do apt-get before install
commit 573dfd57d6852db50b7dd6d206cbc2904eaffe8e
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 13 16:31:36 2020 -0500
do apt-get before install
commit ea5a57c6ff1a35d2c6d6b56fb33a231190d7908a
Merge: db6b6166a 65aa79a03
Author: Michael Dietze <dietze@bu.edu>
Date: Wed May 13 10:32:53 2020 -0400
Merge pull request #2598 from PecanProject/ed2.2_ed2in
Create ED2INv2.2.0
commit 65aa79a03f0f4c277b912b7034328d3a2fe73ecf
Merge: ecf4faf32 db6b6166a
Author: Michael Dietze <dietze@bu.edu>
Date: Wed May 13 09:08:10 2020 -0400
Merge branch 'develop' into ed2.2_ed2in
commit db6b6166a7ba964e5d3563af00d22d72131fb12a
Merge: 301a15e78 78b901c9b
Author: Michael Dietze <dietze@bu.edu>
Date: Wed May 13 09:07:12 2020 -0400
Merge pull request #2606 from ayushprd/2519
Change order of arguments in call_MODIS()
commit ecf4faf3245a0ca5b46060774c92269818ad7f6c
Merge: 2eb8a1001 301a15e78
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Tue May 12 23:49:44 2020 -0700
Merge branch 'develop' into ed2.2_ed2in
commit 6a3fe92c5195759d0dd883da50cb3869a766e6a5
Merge: 2c8eca2d2 301a15e78
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Tue May 12 23:46:41 2020 -0700
Merge branch 'develop' into docker-quickstart-docs
commit 78b901c9bcffa3892a796783c05ed442a4c474de
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Mon May 11 18:39:53 2020 +0530
generated documentation for call_MODIS
commit a6e7c9614bbb224a12cfe7e52413ff9f0ca5e819
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Mon May 11 16:13:45 2020 +0530
Update CHANGELOG.md
commit 40b0e519f774f6b131654ae0d47d5b70eaadfd1a
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Mon May 11 16:04:36 2020 +0530
changed order of arguments, updated docs
commit d7eeb8b516c333911d33dc66cf1384ce8b1e3f22
Author: Ayush Prasad <ayush.prd@gmail.com>
Date: Mon May 11 15:18:23 2020 +0530
updated CHANGELOG.md
commit da17fad705eee338b2732999982637129b6a11eb
Author: Ken Youens-Clark <kyclark@gmail.com>
Date: Fri May 8 16:19:20 2020 -0700
setting the default values to match docker.sh so this will build
commit 30b96bcdd06508edca4345b0ec7d286195b9d362
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Sat May 9 00:04:25 2020 +0530
Update styler-actions.yml
commit 87066d0b3c6674776a9791a46ebc99d2179bb766
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Sat May 9 00:03:54 2020 +0530
Update .github/workflows/styler-actions.yml
Co-authored-by: Chris Black <chris@ckblack.org>
commit 06340b4af02aac590ee3910a0bedf5bc90458782
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Sat May 9 00:01:34 2020 +0530
file name updated
commit 3801fa22ddef3903daa204671b510cc36714c36f
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Fri May 8 06:59:26 2020 +0530
Update .github/workflows/styler-actions.yml
Co-authored-by: Chris Black <chris@ckblack.org>
commit b2e2bd535b4bd00e4cc647d3340c9609f2071272
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Fri May 8 06:58:19 2020 +0530
Update .github/workflows/styler-actions.yml
Co-authored-by: Chris Black <chris@ckblack.org>
commit 301a15e785a2c68b8f4c4e390a1edd6191eae463
Merge: df25a3b85 47a5368c2
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 7 17:28:22 2020 -0500
Merge pull request #2588 from robkooper/fix-edit-docker
fixes not starting after editing files (fixes #2587)
commit 2eb8a1001d0cbdae72507d6085ff583325abea53
Merge: 3562c6501 df25a3b85
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Thu May 7 15:25:15 2020 -0700
Merge branch 'develop' into ed2.2_ed2in
commit 47a5368c21fb16113e2bbfe2d1015028e7f082dd
Merge: 635ec80b3 df25a3b85
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 7 15:44:23 2020 -0500
Merge branch 'develop' into fix-edit-docker
commit df25a3b85593d0e0c22e2be90702dec555c49f81
Merge: 90e70d440 54508fc51
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 7 15:43:58 2020 -0500
Merge pull request #2590 from robkooper/fix-ftp-code
ftp has status code 226 for ok
commit 3562c65017f619546cbbfa659d57a68b3d6f2b3b
Merge: 732ab71a6 90e70d440
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Thu May 7 13:32:40 2020 -0700
Merge branch 'develop' of github.com:pecanproject/pecan into ed2.2_ed2in
commit 54508fc5135290cc04e874f9dab6253f5195740e
Merge: c6c311a0e 90e70d440
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 7 14:47:30 2020 -0500
Merge branch 'develop' into fix-ftp-code
commit 90e70d440acd5cd16c800a243c678e420f30881e
Merge: 2109a8c88 064bdaad5
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 7 14:47:07 2020 -0500
Merge pull request #2596 from rahul799/remove-git-install
removing-git-install
commit 064bdaad515aeb929f2a5a4bf9b3996a1a1bde96
Merge: 92334ae4a 2109a8c88
Author: Rob Kooper <kooper@illinois.edu>
Date: Thu May 7 13:51:00 2020 -0500
Merge branch 'develop' into remove-git-install
commit 635ec80b33f8665a20d9b5977d024575d75a780f
Merge: b0da91424 2109a8c88
Author: Michael Dietze <dietze@bu.edu>
Date: Thu May 7 12:40:53 2020 -0400
Merge branch 'develop' into fix-edit-docker
commit 2109a8c88d92e1f64e1b41c5d50e0e21ebbc8182
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed May 6 17:56:36 2020 -0700
fix typos in docker.sh
commit b0da91424b5553d93e88f3ecb61f81af6d1b6de4
Merge: 07ab6df92 84880c34b
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 6 15:55:43 2020 -0500
Merge branch 'develop' into fix-edit-docker
commit 84880c34b7247fcac878b155492fad67dec7e06b
Merge: d52018ef8 d52d20565
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 6 15:55:22 2020 -0500
Merge pull request #2603 from infotroph/docker_depends_fix
typo in depends Dockerfile
commit 732ab71a6eab45cbbfe5751b0b2f129945d21ed2
Author: Ken Youens-Clark <kyclark@gmail.com>
Date: Wed May 6 13:02:43 2020 -0700
version which might one day be compatible with ED 2.2.0
commit d52d2056568e6ebc411ea28368b0c48cf6531434
Author: Chris Black <chris@ckblack.org>
Date: Wed May 6 21:20:10 2020 +0200
== is a bashism
commit 92334ae4a9ef401a4827ec936f0748e41be10a07
Merge: fa6d5502e d52018ef8
Author: Chris Black <chris@ckblack.org>
Date: Wed May 6 19:47:18 2020 +0200
Merge branch 'develop' into remove-git-install
commit 1ea2cad98f99461844da18f5e6075872df8e3577
Merge: cd8d750bf d52018ef8
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 6 11:03:56 2020 -0500
Merge branch 'develop' into ed2.2_ed2in
commit cd8d750bfa227fb365c97d67ae835cf862e76948
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed May 6 11:03:14 2020 -0500
remove git build of ED
commit 07138ae5552f72a81e43f5752579425bc1d69780
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed May 6 08:59:45 2020 -0700
Update CHANGELOG.md
commit 088bfd11d50e0218d9a2684ff7e7c9d556a04001
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed May 6 08:58:45 2020 -0700
Rename ED2INv2.2.0 to ED2IN.2.2.0
per convention, as requested in https://github.com/PecanProject/pecan/pull/2598#pullrequestreview-406275757
commit b9ad6beaea69f5cf0be761230f7f055cf4f39162
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed May 6 08:57:39 2020 -0700
Update CHANGELOG.md
add changes re: ED2IN to changelog
commit eeb22ff6738dbb12a63d73fd546ea17f5730a1b3
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed May 6 08:54:18 2020 -0700
Delete ED2IN.git (#2599)
this no longer works with the master branch of the https://github.com/EDmodel/ED2 keeping this unversioned ED2IN around will only cause trouble.
commit bde3bc6b75f6d8a8aa169c3b05d6186b2db021ae
Merge: de5c50873 2bb2d4bbb
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Wed May 6 08:53:56 2020 -0700
Merge branch 'develop' into ed2.2_ed2in
commit fa6d5502e3e80115596aca229e79c79a9f585b87
Merge: 15e71d953 7a3365ac5
Author: Rob Kooper <kooper@illinois.edu>
Date: Tue May 5 23:04:22 2020 -0500
Merge branch 'develop' into remove-git-install
commit 2c8eca2d2e6c6066f4f33dc92d124fb49518bda0
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Tue May 5 18:06:00 2020 -0700
add a true docker quickstart
previously the docker-quickstart link pointed to this file, with the first section
```
## The PEcAn docker install process in detail {#docker-quickstart}
```
commit de5c5087306c8127e9186f5995cb6475c77eed35
Merge: 1c4bcd9bf 9b02d18aa
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Tue May 5 17:29:19 2020 -0700
Merge branch 'develop' into ed2.2_ed2in
commit 1c4bcd9bf004d387f34b9ee7e8bbc099459ca662
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Tue May 5 17:19:42 2020 -0700
Update CHANGELOG.md
commit dc1438f5784e2073c75adc2ca6b8ada73e0c232b
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Tue May 5 14:24:37 2020 -0700
Create ED2INv2.2.0
based on ED2IN.git
still need to finish finding and replacing variables
commit 15e71d9538590e517f955e0e544f5e010615fd0b
Merge: 4a7cc603b 78a657fc2
Author: Rob Kooper <kooper@illinois.edu>
Date: Tue May 5 13:18:00 2020 -0500
Merge branch 'develop' into remove-git-install
commit 07ab6df924ad8bc37abb59134ee1eec3e845dca4
Merge: e88649f0b c719dc59e
Author: Rob Kooper <kooper@illinois.edu>
Date: Tue May 5 12:58:38 2020 -0500
Merge branch 'develop' into fix-edit-docker
commit 4a7cc603b9e18a4a0b9ce90766e339772f3b5c4e
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Tue May 5 22:53:16 2020 +0530
removing-git-install
commit 31e85a60a87513b07a67917df3e82a0ae564a56b
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Tue May 5 20:33:44 2020 +0530
Update .github/workflows/styler-actions.yml
Co-authored-by: Chris Black <chris@ckblack.org>
commit d80db13539fd97694866a680f18edf37113e9413
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Tue May 5 18:47:02 2020 +0530
removed unwanted step
commit e88649f0bd408cd3b40bdd9fe78f1050cb972027
Merge: fd856a6ba 4da2f3943
Author: Michael Dietze <dietze@bu.edu>
Date: Tue May 5 06:42:30 2020 -0400
Merge branch 'develop' into fix-edit-docker
commit c6c311a0ee59e606d9fe52738595c3ace7b280e3
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed Apr 29 13:48:22 2020 -0500
remove debug statement
commit 0aaa2714690c9e2b1d6348e66c102d82627392a8
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed Apr 29 13:29:00 2020 -0500
fix missing namespace
commit 5560e0b4dcb45bf89ef255c8e77c72a3d1c520c7
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed Apr 29 12:37:49 2020 -0500
remove timeout
will try servers once, if no versions.txt add to ignored list (and use gray color). This is reset on update servers.
commit 613547ca5496e0cc19645f33a4f1c8c4a653e6c7
Author: Rob Kooper <kooper@illinois.edu>
Date: Wed Apr 29 10:23:48 2020 -0500
ftp has status code 226 for ok
commit fd856a6baca7feb8c4ce7efc9a28a61ad47b3041
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon Apr 27 18:42:32 2020 -0500
run workflow and stop in case of advanced, and continue
commit 079d4772ceaa78bb77a939fcce7ec6d737455e47
Author: Rob Kooper <kooper@illinois.edu>
Date: Mon Apr 27 16:31:05 2020 -0500
fixes not starting after editing files (fixes #2587)
commit 86533c206a0fa1858747ee3340b44606a7f343a6
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Fri Apr 24 13:46:28 2020 +0530
Update styler-actions.yml
commit 8c4a947396a272c8e0ffd4c9d69ea9327bb3a099
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Thu Apr 23 19:10:29 2020 +0530
Update styler-actions.yml
commit f4a04ee62b3e4145d2c3048ddf50a371eb538f32
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Tue Apr 14 14:21:52 2020 +0530
Update styler-actions.yml
commit 5b149af5335698a7b440bd016bd18c0a87236b66
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Tue Apr 14 14:13:44 2020 +0530
Update styler-actions.yml
commit b700de87bd0c5fcbfcb778d263111154e4f07847
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Tue Apr 14 14:01:18 2020 +0530
Update styler-actions.yml
commit 0e9daf7bb7ca6300c2550c1a7f6960a9341c0b0e
Author: Rahul Agrawal <41531498+rahul799@users.noreply.github.com>
Date: Tue Apr 14 13:59:22 2020 +0530
Create styler-actions.yml
commit dc27dd82de6812553116276a0b9e044779e8d619
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Thu Dec 19 15:53:14 2019 -0700
clarifying comment
commit f4d2eff335753a77769bf95e86cde50f31faebbc
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Thu Dec 19 15:51:27 2019 -0700
Update CHANGELOG.md
commit 646c7a0e2eab5b94aacce6c8a2fda1bafeaec834
Author: David LeBauer <dlebauer@email.arizona.edu>
Date: Thu Dec 19 15:49:00 2019 -0700
no carbon storage across years for annual grasses
When there are multiple years, always restart annual plants from seed.
Otherwise (I think) these would be handled the same as Miscanthus + Switchgrass or Sugarcane
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Description
Current behavior: if random effects = TRUE in pecan.xml but none of the trait data have statistics then random effects is set to FALSE. A message is written to the log but this is mostly a hidden assumption that should be up to the user - because it may indicate an incorrect assumption about the data or missing data, or an overspecified model etc.
This was done because models will not converge if there are insufficient data to estimate all of the random effects parameters.
Motivation and Context
I think setting random.effects = FALSE should be a decision made by the end uer.
Even when implemented in 2011, it was not clear that this was necessary. See my comment here f6bcb78#r8861144
Two other options:
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Types of changes
Checklist: