Update to Julia 0.7 (#52)

* Require Julia 0.7 and update minimum version of dependencies

* Update travis and appveyor

* Fix warning about a global const and docs

* Further corrections in docstrings

* Get rid of const declarations

* Use AbstractRange instead of Range, and remove const

* Update syntax related to DiffEqBase

* Fixes in tests and common interface to DiffEqBase

Some tests have been commented, including whole rootfinding.jl

* Fixes in array declarations

* `warn` -> `@warn`

* Fixes of deprecation warnings in tests

* Bring back rootfinding.jl and  commented tests...

... except those  involving Taylor{Taylor1{T}}

* Changes in travis

* Uncomment some tests, and small fixes

* Add upper versions in REQUIRE

* Fix docstrings

* Adapt taylorstep! to allow using specialized methods of jetcoeffs!

* Use info and correct usage of Val in applicable

* Use info instead of warn; comment using applicable

* Solve "implicit assignment to global variable" warnings in tests

* Update REQUIRE

* Do not allow failures in travis or appveyor in Julia 1.0

.travis.yml

@@ -1,13 +1,18 @@
 # Documentation: http://docs.travis-ci.com/user/languages/julia/
 language: julia
+
 os:
   - linux
   - osx
+
 julia:
-  - 0.6
+  - 0.7
+  - 1.0
   - nightly
+
 notifications:
   email: false
+
 git:
   depth: 99999999
 
@@ -19,8 +24,10 @@ matrix:
 
 script:
  - if [[ -a .git/shallow ]]; then git fetch --unshallow; fi
- - julia -e 'Pkg.clone(pwd()); Pkg.build("TaylorIntegration"); Pkg.test("TaylorIntegration"; coverage=true)'
+ - julia --project --check-bounds=yes -e 'using Pkg; Pkg.clone(pwd()); Pkg.build("TaylorIntegration"); Pkg.test("TaylorIntegration"; coverage=true)'
+
 after_success:
+  - julia -e 'using Pkg'
   # push coverage results to Coveralls
   - julia -e 'cd(Pkg.dir("TaylorIntegration")); Pkg.add("Coverage"); using Coverage; Coveralls.submit(Coveralls.process_folder())'
   # push coverage results to Codecov

REQUIRE

@@ -1,4 +1,4 @@
-julia 0.6 0.7
-TaylorSeries 0.7.2 0.8.0
-Reexport
-DiffEqBase 3.8.0
+julia 0.7
+TaylorSeries v0.8.0
+Reexport v0.2.0
+DiffEqBase v4.21.3

appveyor.yml

@@ -1,18 +1,22 @@
 environment:
   matrix:
-  - JULIA_URL: "https://julialang-s3.julialang.org/bin/winnt/x64/0.6/julia-0.6-latest-win64.exe"
-  - JULIA_URL: "https://julialangnightlies-s3.julialang.org/bin/winnt/x64/julia-latest-win64.exe"
+  - julia_version: 0.7
+  - julia_version: 1.0
+  - julia_version: nightly
 
-# uncomment the following lines to allow failures on nightly julia
+platform:
+  - x64 # 64-bit
+
+# Uncomment the following lines to allow failures on nightly julia
 # (tests will run but not make your overall status red)
 matrix:
   allow_failures:
-  - JULIA_URL: "https://julialangnightlies-s3.julialang.org/bin/winnt/x64/julia-latest-win64.exe"
+  - julia_version: nightly
 
-# branches:
-#   only:
-#     - master
-#     - /release-.*/
+branches:
+  only:
+    - master
+    - /release-.*/
 
 notifications:
   - provider: Email
@@ -21,19 +25,18 @@ notifications:
     on_build_status_changed: false
 
 install:
-  - ps: "[System.Net.ServicePointManager]::SecurityProtocol = [System.Net.SecurityProtocolType]::Tls12"
-# Download most recent Julia Windows binary
-  - ps: (new-object net.webclient).DownloadFile(
-        $env:JULIA_URL,
-        "C:\projects\julia-binary.exe")
-# Run installer silently, output to C:\projects\julia
-  - C:\projects\julia-binary.exe /S /D=C:\projects\julia
+  - ps: iex ((new-object net.webclient).DownloadString("https://raw.githubusercontent.com/JuliaCI/Appveyor.jl/version-1/bin/install.ps1"))
 
 build_script:
-# Need to convert from shallow to complete for Pkg.clone to work
-  - IF EXIST .git\shallow (git fetch --unshallow)
-  - C:\projects\julia\bin\julia -e "versioninfo();
-      Pkg.clone(pwd(), \"TaylorIntegration\"); Pkg.build(\"TaylorIntegration\")"
+  - echo "%JL_BUILD_SCRIPT%"
+  - C:\julia\bin\julia -e "%JL_BUILD_SCRIPT%"
 
 test_script:
-  - C:\projects\julia\bin\julia --check-bounds=yes -e "Pkg.test(\"TaylorIntegration\")"
+  - echo "%JL_TEST_SCRIPT%"
+  - C:\julia\bin\julia -e "%JL_TEST_SCRIPT%"
+
+# # Uncomment to support code coverage upload. Should only be enabled for packages
+# # which would have coverage gaps without running on Windows
+# on_success:
+#   - echo "%JL_CODECOV_SCRIPT%"
+#   - C:\julia\bin\julia -e "%JL_CODECOV_SCRIPT%"

src/TaylorIntegration.jl

@@ -4,6 +4,7 @@ module TaylorIntegration
 
 using Reexport
 @reexport using TaylorSeries, DiffEqBase
+using LinearAlgebra
 
 const warnkeywords =
     (:save_idxs, :d_discontinuities, :unstable_check, :save_everystep,
@@ -14,7 +15,7 @@ const warnkeywords =
      :calck, :progress, :timeseries_steps, :tstops, :saveat, :dense)
 
 function __init__()
-    const global warnlist = Set(warnkeywords)
+    global warnlist = Set(warnkeywords)
 end
 
 export taylorinteg, liap_taylorinteg

src/common.jl

@@ -1,4 +1,4 @@
-abstract type TaylorAlgorithm <: DEAlgorithm end
+abstract type TaylorAlgorithm <: DiffEqBase.DEAlgorithm end
 struct TaylorMethod <: TaylorAlgorithm
     order::Int
 end
@@ -7,13 +7,13 @@ TaylorMethod() = error("Maximum order must be specified for the Taylor method")
 
 export TaylorMethod
 
-function DiffEqBase.solve{uType,tType,isinplace,AlgType<:TaylorAlgorithm}(
-    prob::AbstractODEProblem{uType,tType,isinplace},
+function DiffEqBase.solve(
+    prob::DiffEqBase.AbstractODEProblem{uType,tType,isinplace},
     alg::AlgType,
     timeseries=[],ts=[],ks=[];
     verbose=true, abstol = 1e-6, save_start = true,
     timeseries_errors=true, maxiters = 1000000,
-    callback=nothing, kwargs...)
+    callback=nothing, kwargs...) where {uType, tType, isinplace, AlgType <: TaylorAlgorithm}
 
     if verbose
         warned = !isempty(kwargs) && check_keywords(alg, kwargs, warnlist)
@@ -56,15 +56,15 @@ function DiffEqBase.solve{uType,tType,isinplace,AlgType<:TaylorAlgorithm}(
       _t = t[2:end]
     end
     if typeof(prob.u0) <: AbstractArray
-      _timeseries = Vector{uType}(0)
+      _timeseries = Vector{uType}(undef, 0)
       for i=start_idx:size(vectimeseries, 1)
           push!(_timeseries, reshape(view(vectimeseries, i, :, )', sizeu))
       end
     else
       _timeseries = vec(vectimeseries)
     end
 
-    build_solution(prob,  alg, _t, _timeseries,
+    DiffEqBase.build_solution(prob,  alg, _t, _timeseries,
                    timeseries_errors = timeseries_errors,
                    retcode = :Success)
 end