v0.5.10

What's Changed

• automatic_submission_notebook by @RobbinBouwmeester in #497
• Create Server resubmission.ipynb by @RobbinBouwmeester in #507
• parsing of i2masschroq parameters when using sage by @mlocardpaulet in #509
• 🐛 apply policy update: add configuration key by @enryH in #513
• Remove dependency on st_pages by @RobbinBouwmeester in #514
• Peptidoform output from Proteome Discoverer by @mlocardpaulet in #510
• Change loc doc url by @RobbinBouwmeester in #515
• Title location by @RobbinBouwmeester in #516
• Update Server resubmission.ipynb by @RobbinBouwmeester in #517
• Rem page by @RobbinBouwmeester in #518

Full Changelog: v0.5.9...v0.5.10

v0.5.9

What's Changed

• Fix modification parsing for older DIANN versions by @rodvrees in #506

Full Changelog: v0.5.8...v0.5.9

v0.5.8

What's Changed

• Fix Alphadia submission params parsing by @rodvrees in #502
• AlphaDIA: fix parsing outside of submission by @rodvrees in #503
• bugfix for MBR parameter parsing in MQ by @Cajac102 in #501

Full Changelog: v0.5.7...v0.5.8

v0.5.7

What's Changed

• Fixes mean plotting by @rodvrees in #498

Full Changelog: v0.5.6...v0.5.7

v0.5.6

What's Changed

• Add location submitted files in PR by @RobbinBouwmeester in #487
• Rem template and abstract by @RobbinBouwmeester in #488
• 477 how to handle xtandem hidden parameters that have an impact on final results by @mlocardpaulet in #491
• 380 homogenization of parameters by @Cajac102 in #492
• 🐛 filling object column with boolean values by @enryH in #481
• 472 make the dda module compatible with msangel outputs by @mlocardpaulet in #490
• Update pyproject.toml by @RobbinBouwmeester in #494
• 449 add raw file names next to link to pxd by @mlocardpaulet in #493
• Change median or mean quant error viz depending on user's choice by @rodvrees in #489

Full Changelog: v0.5.5...v0.5.6

v0.5.5

What's Changed

• Introduce deflating by @RobbinBouwmeester in #486
• update module documentation by @mlocardpaulet in #485

Full Changelog: v0.5.4...v0.5.5

v0.5.4

What's Changed

• diaPASEF module by @rodvrees in #452
• Documentation attempt2 by @RobbinBouwmeester in #466
• Add submission comment to written output by @JuliaS92 in #469
• Proline support dda module issue #354 by @mlocardpaulet in #471
• Change parsing mods by @RobbinBouwmeester in #475
• Rem depend by @RobbinBouwmeester in #476
• Update quant_lfq_ion_DDA.py by @RobbinBouwmeester in #478
• Change level ref to results by @RobbinBouwmeester in #479
• 🐛 update links (all as markdown) by @enryH in #482
• :error: move type conversion up to avoid SettingWithCopyWarning by @enryH in #480
• Update quant_base_module.py by @RobbinBouwmeester in #483
• Update quant_base_module.py by @RobbinBouwmeester in #484

New Contributors

• @JuliaS92 made their first contribution in #469

Full Changelog: v0.5.3...v0.5.4

v0.5.3

What's Changed

• Update quant_base_module.py by @RobbinBouwmeester in #462

Full Changelog: v0.5.2...v0.5.3

Issues with storing submitted data

What's Changed

• Add protein columns to alphadia and spectronaut TOMLs by @rodvrees in #445
• Change saving from intermediate to raw input by @RobbinBouwmeester in #461

Full Changelog: v0.5.1...v0.5.2

v0.5.1

What's Changed

• Documentation dda peptidoforms by @mlocardpaulet in #441
• fix param parsing for diann issue #447 by @wolski in #448
• Fix link to fasta by @rodvrees in #450
• homogenise peptidoform strings in DDA result files by @Cajac102 in #446

Full Changelog: v0.5.0...v0.5.1