Merge branch 'master' into office07

* master:
  Some more Swedish translations (JabRef#1836)
  Updated Menu_tr.properties
  Updated jabref_tr.properties
  Add check for obsolete database structure. Add help popup. (JabRef#1818)
  Updated dependencies (JabRef#1831)
  Removed one Globals call from MetaData (JabRef#1782)

build.gradle

@@ -79,7 +79,7 @@ dependencies {
     compile 'org.apache.pdfbox:jempbox:1.8.12'
 
     // required for reading write-protected PDFs - see https://github.com/JabRef/jabref/pull/942#issuecomment-209252635
-    compile 'org.bouncycastle:bcprov-jdk15on:1.54'
+    compile 'org.bouncycastle:bcprov-jdk15on:1.55'
 
     compile 'commons-cli:commons-cli:1.3.1'
 
@@ -120,7 +120,7 @@ dependencies {
 
     testCompile 'junit:junit:4.12'
     testCompile 'org.mockito:mockito-core:1.10.19'
-    testCompile 'com.github.tomakehurst:wiremock:2.1.10'
+    testCompile 'com.github.tomakehurst:wiremock:2.1.11'
     testCompile 'org.assertj:assertj-swing-junit:3.4.0'
 }
 

src/databaseTest/java/net/sf/jabref/shared/DBMSProcessorTest.java

@@ -40,7 +40,7 @@ public void setUp() throws ClassNotFoundException, SQLException {
             connection = TestConnector.getTestConnection(dbmsType);
         }
         dbmsProcessor = DBMSProcessor.getProcessorInstance(connection, dbmsType);
-        dbmsProcessor.setUpSharedDatabase();
+        dbmsProcessor.setupSharedDatabase();
     }
 
     @Parameters(name = "Test with {0} database system")
@@ -58,7 +58,7 @@ public void testCheckBaseIntegrity() throws SQLException {
     @Test
     public void testSetUpSharedDatabase() throws SQLException {
         clear();
-        dbmsProcessor.setUpSharedDatabase();
+        dbmsProcessor.setupSharedDatabase();
         Assert.assertTrue(dbmsProcessor.checkBaseIntegrity());
     }
 

src/databaseTest/java/net/sf/jabref/shared/DBMSSynchronizerTest.java

@@ -15,6 +15,7 @@
 import net.sf.jabref.model.database.BibDatabase;
 import net.sf.jabref.model.entry.BibEntry;
 import net.sf.jabref.preferences.JabRefPreferences;
+import net.sf.jabref.shared.exception.DatabaseNotSupportedException;
 import net.sf.jabref.shared.exception.OfflineLockException;
 import net.sf.jabref.shared.exception.SharedEntryNotPresentException;
 
@@ -40,7 +41,7 @@ public class DBMSSynchronizerTest {
 
 
     @Before
-    public void setUp() throws ClassNotFoundException, SQLException {
+    public void setUp() throws ClassNotFoundException, SQLException, DatabaseNotSupportedException {
 
         Globals.prefs = JabRefPreferences.getInstance();
 
@@ -130,7 +131,7 @@ public void testMetaDataChangedEventListener() {
     }
 
     @Test
-    public void testInitializeDatabases() throws SQLException {
+    public void testInitializeDatabases() throws SQLException, DatabaseNotSupportedException {
         clear();
         dbmsSynchronizer.initializeDatabases();
         Assert.assertTrue(dbmsProcessor.checkBaseIntegrity());

src/databaseTest/java/net/sf/jabref/shared/SynchronizationTestSimulator.java

@@ -11,6 +11,7 @@
 import net.sf.jabref.model.database.DatabaseLocation;
 import net.sf.jabref.model.entry.BibEntry;
 import net.sf.jabref.preferences.JabRefPreferences;
+import net.sf.jabref.shared.exception.DatabaseNotSupportedException;
 
 import org.junit.After;
 import org.junit.Assert;
@@ -36,7 +37,7 @@ public class SynchronizationTestSimulator {
 
 
     @Before
-    public void setUp() throws ClassNotFoundException, SQLException {
+    public void setUp() throws ClassNotFoundException, SQLException, DatabaseNotSupportedException {
         // Get only one connection for each parameter
         if (TestConnector.currentConnectionType != dbmsType) {
             connection = TestConnector.getTestConnection(dbmsType);

src/main/java/net/sf/jabref/MetaData.java

@@ -28,6 +28,7 @@
 import net.sf.jabref.logic.util.strings.StringUtil;
 import net.sf.jabref.model.bibtexkeypattern.AbstractBibtexKeyPattern;
 import net.sf.jabref.model.bibtexkeypattern.DatabaseBibtexKeyPattern;
+import net.sf.jabref.model.bibtexkeypattern.GlobalBibtexKeyPattern;
 import net.sf.jabref.model.database.BibDatabaseMode;
 import net.sf.jabref.model.entry.FieldName;
 
@@ -236,12 +237,12 @@ private static Optional<String> getNextUnit(Reader reader) throws IOException {
     /**
      * @return the stored label patterns
      */
-    public AbstractBibtexKeyPattern getBibtexKeyPattern() {
+    public AbstractBibtexKeyPattern getBibtexKeyPattern(GlobalBibtexKeyPattern globalPattern) {
         if (bibtexKeyPattern != null) {
             return bibtexKeyPattern;
         }
 
-        bibtexKeyPattern = new DatabaseBibtexKeyPattern(Globals.prefs);
+        bibtexKeyPattern = new DatabaseBibtexKeyPattern(globalPattern);
 
         // read the data from the metadata and store it into the bibtexKeyPattern
         for (String key : this) {

src/main/java/net/sf/jabref/gui/BibtexKeyPatternDialog.java

@@ -13,6 +13,7 @@
 import javax.swing.JPanel;
 import javax.swing.WindowConstants;
 
+import net.sf.jabref.Globals;
 import net.sf.jabref.MetaData;
 import net.sf.jabref.gui.bibtexkeypattern.BibtexKeyPatternPanel;
 import net.sf.jabref.gui.keyboard.KeyBinder;
@@ -43,7 +44,7 @@ public BibtexKeyPatternDialog(JabRefFrame parent, BasePanel panel) {
     public void setPanel(BasePanel panel) {
         this.panel = panel;
         this.metaData = panel.getBibDatabaseContext().getMetaData();
-        AbstractBibtexKeyPattern keypatterns = metaData.getBibtexKeyPattern();
+        AbstractBibtexKeyPattern keypatterns = metaData.getBibtexKeyPattern(Globals.prefs.getKeyPattern());
         bibtexKeyPatternPanel.setValues(keypatterns);
     }
 

src/main/java/net/sf/jabref/gui/bibtexkeypattern/BibtexKeyPatternPanel.java

@@ -231,7 +231,7 @@ protected GlobalBibtexKeyPattern getKeyPatternAsGlobalBibtexKeyPattern() {
     }
 
     public DatabaseBibtexKeyPattern getKeyPatternAsDatabaseBibtexKeyPattern() {
-        DatabaseBibtexKeyPattern res = new DatabaseBibtexKeyPattern(Globals.prefs);
+        DatabaseBibtexKeyPattern res = new DatabaseBibtexKeyPattern(Globals.prefs.getKeyPattern());
         fillPatternUsingPanelData(res);
         return res;
     }

src/main/java/net/sf/jabref/gui/help/HelpAction.java

@@ -1,11 +1,16 @@
 package net.sf.jabref.gui.help;
 
+import java.awt.Color;
+import java.awt.Cursor;
 import java.awt.Dimension;
 import java.awt.event.ActionEvent;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
 
 import javax.swing.Action;
 import javax.swing.Icon;
 import javax.swing.JButton;
+import javax.swing.JLabel;
 import javax.swing.KeyStroke;
 
 import net.sf.jabref.Globals;
@@ -57,12 +62,29 @@ public JButton getHelpButton() {
         return button;
     }
 
+    public JLabel getHelpLabel(String labelText) {
+        JLabel helpLabel = new JLabel("<html><u>" + labelText + "</u></html>");
+        helpLabel.setForeground(Color.BLUE);
+        helpLabel.setCursor(new Cursor(Cursor.HAND_CURSOR));
+        helpLabel.addMouseListener(new MouseAdapter() {
+            @Override
+            public void mouseClicked(MouseEvent e) {
+                openHelpPage();
+            }
+        });
+        return helpLabel;
+    }
+
     public void setHelpFile(HelpFile urlPart) {
         this.helpPage = urlPart;
     }
 
     @Override
     public void actionPerformed(ActionEvent e) {
+        openHelpPage();
+    }
+
+    private void openHelpPage() {
         String url = "https://help.jabref.org/" + Globals.prefs.get(JabRefPreferences.LANGUAGE) + "/" + helpPage.getPageName();
         JabRefDesktop.openBrowserShowPopup(url);
     }

src/main/java/net/sf/jabref/gui/shared/MigrationHelpDialog.java

@@ -0,0 +1,80 @@
+package net.sf.jabref.gui.shared;
+
+import java.awt.BorderLayout;
+import java.awt.Component;
+import java.awt.Dimension;
+import java.awt.event.ActionEvent;
+import java.awt.event.KeyEvent;
+
+import javax.swing.AbstractAction;
+import javax.swing.Action;
+import javax.swing.Box;
+import javax.swing.BoxLayout;
+import javax.swing.JButton;
+import javax.swing.JComponent;
+import javax.swing.JDialog;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.KeyStroke;
+import javax.swing.border.EmptyBorder;
+
+import net.sf.jabref.gui.help.HelpAction;
+import net.sf.jabref.logic.help.HelpFile;
+import net.sf.jabref.logic.l10n.Localization;
+
+public class MigrationHelpDialog extends JDialog {
+
+    public MigrationHelpDialog(OpenSharedDatabaseDialog openSharedDatabaseDialog) {
+        super(openSharedDatabaseDialog, Localization.lang("Migration help information"));
+        setModal(true);
+
+        String migrationMessage = Localization
+                .lang("Entered database has obsolete structure and is no longer supported.");
+        JLabel migrationLabel = new JLabel(migrationMessage);
+        migrationLabel.setAlignmentX(Component.LEFT_ALIGNMENT);
+
+        String helpMessage = Localization.lang("Click here to learn about the migration of pre-3.6 databases.");
+        JLabel helpLabel = new HelpAction(HelpFile.SQL_DATABASE_MIGRATION).getHelpLabel(helpMessage);
+        helpLabel.setAlignmentX(Component.LEFT_ALIGNMENT);
+
+        String informationMessage = Localization.lang("However, a new database was created alongside the pre-3.6 one.");
+        JLabel informationLabel = new JLabel(informationMessage);
+        informationLabel.setAlignmentX(Component.LEFT_ALIGNMENT);
+
+        Action openAction = new AbstractAction() {
+
+            @Override
+            public void actionPerformed(ActionEvent e) {
+                openSharedDatabaseDialog.openSharedDatabase();
+            }
+        };
+
+        JButton okButton = new JButton(Localization.lang("OK"));
+        okButton.addActionListener(openAction);
+        okButton.setAlignmentX(Component.CENTER_ALIGNMENT);
+        okButton.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke(KeyEvent.VK_ENTER, 0),
+                "Enter_pressed");
+        okButton.getActionMap().put("Enter_pressed", openAction);
+
+        JPanel buttonPanel = new JPanel();
+        buttonPanel.add(okButton, BorderLayout.CENTER);
+
+        JPanel contentPanel = new JPanel();
+        contentPanel.setBorder(new EmptyBorder(9, 9, 9, 9));
+        contentPanel.setLayout(new BoxLayout(contentPanel, BoxLayout.Y_AXIS));
+
+        contentPanel.add(migrationLabel);
+        contentPanel.add(Box.createRigidArea(new Dimension(0, 10)));
+        contentPanel.add(helpLabel);
+        contentPanel.add(Box.createRigidArea(new Dimension(0, 10)));
+        contentPanel.add(informationLabel);
+        contentPanel.add(Box.createRigidArea(new Dimension(0, 20)));
+        contentPanel.add(buttonPanel);
+
+        add(contentPanel);
+
+        setResizable(false);
+        pack();
+        setLocationRelativeTo(openSharedDatabaseDialog);
+    }
+}