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[FIX] IntendedFor in (i)EEG is dataset relative #1093

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merged 3 commits into from
May 2, 2022
Merged

[FIX] IntendedFor in (i)EEG is dataset relative #1093

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530f383
[FIX] add missing entities to AssociatedEmptyRoom example
sappelhoff Apr 25, 2022
8fb4ca8
[FIX] IntendedFor dataset relative for i/eeg
sappelhoff Apr 25, 2022
15b4e7f
Merge branch 'master' into fix/eegieeg/intendedfor
sappelhoff Apr 29, 2022
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2 changes: 1 addition & 1 deletion src/04-modality-specific-files/03-electroencephalography.md
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Original file line number Diff line number Diff line change
Expand Up @@ -444,7 +444,7 @@ and a guide for using macros can be found at
-->
{{ MACROS___make_metadata_table(
{
"IntendedFor": (
"IntendedFor__ds_relative": (
"OPTIONAL",
"This identifies the MRI or CT scan associated with the electrodes, "
"landmarks, and fiducials.",
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6 changes: 3 additions & 3 deletions src/04-modality-specific-files/04-intracranial-electroencephalography.md
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Expand Up @@ -487,14 +487,14 @@ and a guide for using macros can be found at
-->
{{ MACROS___make_metadata_table(
{
"IntendedFor": (
"IntendedFor__ds_relative": (
"OPTIONAL",
"If only a surface reconstruction is available, this should point to "
"the surface reconstruction file. "
"Note that this file should have the same coordinate system "
"specified in `iEEGCoordinateSystem`. "
"For example, **T1**: `'sub-<label>/ses-<label>/anat/"
"sub-01_T1w.nii.gz'` "
"For example, **T1**: `'/sub-<label>/ses-<label>/anat/"
"sub-01_T1w.nii.gz'`"
"**Surface**: `'/derivatives/surfaces/sub-<label>/ses-<label>/anat/"
"sub-01_hemi-R_desc-T1w_pial.surf.gii'` "
"**Operative photo**: `'/sub-<label>/ses-<label>/ieeg/"
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21 changes: 19 additions & 2 deletions src/schema/objects/metadata.yaml
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Expand Up @@ -134,11 +134,13 @@ ArterialSpinLabelingType:
AssociatedEmptyRoom:
name: AssociatedEmptyRoom
description: |
Relative path in BIDS directory structure to empty-room file associated with
A path pointing to an empty-room file associated with
the subject's MEG recording.
The path is relative to the BIDS dataset root.
The path needs to use forward slashes instead of backward slashes
(for example,
"sub-emptyroom/ses-/meg/sub-emptyroom_ses-_task-noise_run-_meg.ds").
"sub-emptyroom/ses-rest/meg/sub-emptyroom_ses-rest_task-noise_run-01_meg.ds").
Supplying a list of several paths to empty-room files is possible.
anyOf:
- type: array
items:
Expand Down Expand Up @@ -1298,6 +1300,21 @@ IntendedFor:
items:
type: string
format: participant_relative
IntendedFor__ds_relative:
name: IntendedFor
description: |
The paths to files for which the associated file is intended to be used.
Contains one or more filenames with paths relative to the dataset
root.
Paths need to use forward slashes instead of backward slashes,
regardless of operating system.
anyOf:
- type: string
format: dataset_relative
- type: array
items:
type: string
format: dataset_relative
InversionTime:
name: InversionTime
description: |
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