[MAINT] update packaging

.flake8

@@ -0,0 +1,7 @@
+[flake8]
+max-line-length = 99
+exclude = *build/,_version.py,due.py
+putty-ignore =
+    */__init__.py : +F401
+ignore = E203,E402,E722,W503
+docstring-convention = numpy

.github/workflows/pypi-publish.yml

@@ -18,7 +18,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v4
       with:
-        python-version: '3.7'
+        python-version: '3.8'
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip

.github/workflows/testing.yml

@@ -20,9 +20,6 @@ jobs:
     outputs:
       skip: ${{ steps.result_step.outputs.ci-skip }}
     steps:
-    - uses: actions/checkout@v3
-      with:
-        fetch-depth: 0
     - id: result_step
       uses: mstachniuk/ci-skip@master
       with:
@@ -32,18 +29,20 @@ jobs:
   run_tests:
     needs: check_skip
     if: ${{ needs.check_skip.outputs.skip == 'false' }}
-    runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: ['3.7', '3.8', '3.9', '3.10', '3.11']
+        python-version: ['3.8', '3.9', '3.10', '3.11']
+    runs-on: ${{ matrix.os }}
     name: ${{ matrix.os }} with Python ${{ matrix.python-version }}
     defaults:
       run:
         shell: bash
     steps:
     - uses: actions/checkout@v3
+      with:
+        submodules: recursive
     - name: Set up python
       uses: actions/setup-python@v4
       with:
@@ -53,7 +52,7 @@ jobs:
       run: python -c "import sys; print(sys.version)"
     - name: Install pybids-reports
       shell: bash {0}
-      run: pip install -e .[tests]
+      run: pip install .[tests]
     - name: Run tests
       shell: bash {0}
       run: python -m pytest --pyargs bids/ext/reports --cov=bids/ext/reports

.gitignore

@@ -1,3 +1,6 @@
+# do not track _version.py for hatch
+bids/ext/reports/_version.py
+
 tmp.py
 
 # Byte-compiled / optimized / DLL files

.pre-commit-config.yaml

@@ -12,44 +12,48 @@ repos:
   - id: check-added-large-files
   - id: check-case-conflict
 
-
-- repo: https://github.com/psf/black
-  rev: 23.3.0
-  hooks:
-  - id: black
-
-- repo: https://github.com/pycqa/flake8
-  rev: 6.0.0
-  hooks:
-  - id: flake8
-    args: [--config=setup.cfg]
-
-# - repo: https://github.com/pre-commit/mirrors-mypy
-#   rev: v0.991
-#   hooks:
-#   - id: mypy
-
-- repo: https://github.com/pyCQA/isort
-  rev: 5.12.0
+- repo: https://github.com/codespell-project/codespell
+  rev: v2.2.4
   hooks:
-  - id: isort
-
+  - id: codespell
+    args: [--toml=pyproject.toml]
+    additional_dependencies: [tomli]
 
 - repo: https://github.com/jumanjihouse/pre-commit-hook-yamlfmt
   rev: 0.2.3
   hooks:
   - id: yamlfmt
     args: [--mapping, '2', --sequence, '2', --offset, '0']
 
+# - repo: https://github.com/asottile/setup-cfg-fmt
+#   rev: v2.2.0
+#   hooks:
+#   - id: setup-cfg-fmt
 
 - repo: https://github.com/asottile/pyupgrade
   rev: v3.3.1
   hooks:
   - id: pyupgrade
-    args: [--py37-plus]
+    args: [--py38-plus]
 
+- repo: https://github.com/psf/black
+  rev: 22.12.0
+  hooks:
+  - id: black
+    args: [--config=pyproject.toml, --verbose]
 
-- repo: https://github.com/asottile/setup-cfg-fmt
-  rev: v2.2.0
+# - repo: https://github.com/pre-commit/mirrors-mypy
+#   rev: v0.991
+#   hooks:
+#   - id: mypy
+
+# - repo: https://github.com/pyCQA/isort
+#   rev: 5.11.4
+#   hooks:
+#   - id: isort
+
+- repo: https://github.com/pycqa/flake8
+  rev: 6.0.0
   hooks:
-  - id: setup-cfg-fmt
+  - id: flake8
+    args: [--config=.flake8]

bids/ext/reports/__init__.py

@@ -14,4 +14,4 @@
 
 del due, Doi
 
-__version__ = _version.get_versions()["version"]
+__version__ = _version.__version__