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v0.5.5

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@lomereiter lomereiter released this 28 Jun 19:56
· 557 commits to master since this release
  • Multiple bug fixes in mpileup tool, thanks to heavy testing by @rernst (#75, #142, #143)
  • Updated flagstat and markdup output to be equivalent to recent versions of samtools and Picard respectively (#141, #148 )
  • Fixed support for unsorted BED files in depth tool (#147) (fixed in 0.5.8)
  • Added back optional output filename in index (it was removed in 0.5.0)
  • Fixed a bug in uncompressed BAM writing (#137)