0.6.8-pre3
Pre-release
Pre-release
This is a pre-release of sambamba, please test.
ChangeLog v0.6.8-pre3 (20180910)
Pre-release with a much faster statically compiled binary. 10-20%
faster than v0.6.6, due to ldc and LLVM improvements. Fixes speed
regression of v0.6.7 for large files due to singleobj compilation. See
also #345 and
performance
64-bit compilation should be fine on ldc 1.10. i386 target is still a problem.
- Fix mark duplicates in files with many contigs, see #361 (thanks Devon Ryan @dpryan79)
- Fix Bcftools version checking #352 (thanks Nathan S. Watson-Haigh @nathanhaigh)
- Fixate version info in BAM output headers for reproducibility. See #357
- Fixed Makefile for general use, see #332
- Started benchmarking, see #283 and https://github.com/biod/sambamba/blob/master/test/benchmark/stats.org
- Readded Travis-ci support for Linux (MacOS is disabled #338)
- Updated BioD to latest biod/BioD@5e56b2b
- Bug fixes:
- Documentation updates
- Updated lz4 to latest