library_to_samplesheet

A simple package to convert library sheets used for NextSeq runs to sample sheets suitable for bcl2fastq.

Contains a Dockerfile for bcl2fastq conversion and script (run_container .py) for it's end-to-end operation in an ACI setup. Unfortunately, ACI is limited in its memory options and some runs fail conversion because of it.

As an alternative, AVM is set up and a new

Not a general purpose process - meant to work only for our specific use case.

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.