Merge pull request #54 from drcandacemakedamoore/trytolink

first try
carpentries-incubator · Dec 20, 2024 · 659646a · 659646a
2 parents 512ffef + 3a06615
commit 659646a
Showing 1 changed file with 12 additions and 7 deletions.
diff --git a/episodes/scanner-to-computer.md b/episodes/scanner-to-computer.md
@@ -56,13 +56,18 @@ exercises: 10
 
 ## Neuroimaging file formats
 
-| Format Name | File Extension | Origin                                         | 
-| ----------- | -------------- | ---------------------------------------------- |
-| DICOM       | none           | ACR/NEMA Consortium                            | 
-| Analyze     | .img/.hdr      | Analyze Software, Mayo Clinic                  | 
-| NIfTI       | .nii           | Neuroimaging Informatics Technology Initiative | 
-| MINC        | .mnc           | Montreal Neurological Institute                | 
-| NRRD        | .nrrd          |                                                | 
+<h6 id="fileformats"> Common file formats:</h6>
+
+| Format Name | File Extension | Origin/Group                                  | More info|
+| ----------- | -------------- | --------------------------------------------- |-----------
+| DICOM       | none or `.dc`  | ACR/NEMA Consortium                           |https://www.dicomstandard.org/  |
+| Analyze     | `.img`/`.hdr`   | Analyze Software, Mayo Clinic                 |https://eeg.sourceforge.net/ANALYZE75.pdf|
+| NIfTI       | `.nii`  (or `.nii.gz`) | Neuroimaging Informatics Technology Initiative|https://brainder.org/2012/09/23/the-nifti-file-format/|
+| MINC        | `.mnc`           | Montreal Neurological Institute               |https://www.mcgill.ca/bic/software/minc|
+| NRRD        | `.nrrd`          |                                               |https://teem.sourceforge.net/nrrd/format.html|
+| MGH         |`.mgz`  or `.mgh` (or `.mgh.gz`) | Massachusetts General Hospital|https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat|
+
+
 
 From the MRI scanner, images are initially collected in the DICOM format and can be converted to these other formats to make working with the data easier.