Silence -Wbitwise-instead-of-logical #400
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| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - master | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| container: ${{ matrix.config.image }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.bioc }} - ${{ matrix.config.image }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: ubuntu-latest, bioc: 'devel', image: "alanocallaghan/basics:latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| CRAN: ${{ matrix.config.cran }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| dependencies <- remotes::local_package_deps(dependencies = TRUE) | |
| leftovers <- setdiff(dependencies, installed.packages()) | |
| BiocManager::install(leftovers, ask=FALSE, Ncpu=2L) | |
| BiocManager::install(c("rcmdcheck", "magick", "BiocManager", "BiocCheck"), ask=FALSE, Ncpu=2L) | |
| shell: Rscript {0} | |
| - name: Check | |
| uses: r-lib/actions/check-r-package@v2 | |
| - name: BiocCheck | |
| run: BiocCheck::BiocCheck(dir('check', 'tar.gz$', full.names = TRUE), `quit-with-status` = TRUE) | |
| shell: Rscript {0} |