⬆️🪝 update pre-commit hooks (#198)

<!--pre-commit.ci start-->
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 →
v4.6.0](pre-commit/pre-commit-hooks@v4.5.0...v4.6.0)
- [github.com/sirosen/texthooks: 0.6.3 →
0.6.6](sirosen/texthooks@0.6.3...0.6.6)
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 →
v0.3.7](astral-sh/ruff-pre-commit@v0.1.11...v0.3.7)
- [github.com/pre-commit/mirrors-mypy: v1.8.0 →
v1.9.0](pre-commit/mirrors-mypy@v1.8.0...v1.9.0)
- [github.com/pre-commit/mirrors-clang-format: v17.0.6 →
v18.1.3](pre-commit/mirrors-clang-format@v17.0.6...v18.1.3)
<!--pre-commit.ci end-->

.pre-commit-config.yaml

@@ -15,7 +15,7 @@ ci:
 repos:
   # Standard hooks
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
       - id: check-added-large-files
       - id: check-case-conflict
@@ -36,7 +36,7 @@ repos:
 
   # Handling unwanted unicode characters
   - repo: https://github.com/sirosen/texthooks
-    rev: 0.6.3
+    rev: 0.6.6
     hooks:
       - id: fix-ligatures
       - id: fix-smartquotes
@@ -51,7 +51,7 @@ repos:
 
   #  Python linting and formatting using ruff
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.11
+    rev: v0.3.7
     hooks:
       - id: ruff
         args: ["--fix", "--show-fixes"]
@@ -68,7 +68,7 @@ repos:
 
   # Check static types with mypy
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.8.0
+    rev: v1.9.0
     hooks:
       - id: mypy
         files: ^(src/mqt|test/python)
@@ -92,7 +92,7 @@ repos:
 
   # Clang-format the C++ part of the code base automatically
   - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v17.0.6
+    rev: v18.1.3
     hooks:
       - id: clang-format
         types_or: [c++, c, cuda]

include/Decoder.hpp

@@ -73,7 +73,7 @@ class Decoder {
     GrowthVariant  growth = GrowthVariant::AllComponents; // standard
 
     Decoder() = default;
-    virtual void decode(const std::vector<bool>&){}; // NOLINT(readability-named-parameter)
+    virtual void decode(const std::vector<bool>&) {}; // NOLINT(readability-named-parameter)
     virtual ~Decoder() = default;
 
     [[nodiscard]] const std::unique_ptr<Code>& getCode() const {
@@ -92,6 +92,6 @@ class Decoder {
             this->code = std::make_unique<Code>(*c.gethZ()->pcm, *c.gethX()->pcm);
         }
     }
-    virtual void reset(){};
+    virtual void reset() {};
 };
 #endif // QUNIONFIND_DECODER_HPP

pyproject.toml

@@ -195,7 +195,10 @@ unsafe-fixes = true
 [tool.ruff.lint]
 exclude = [
     "scripts/*",
-    "*/cc_decoder/plots.py"
+    "*/cc_decoder/plots.py",
+    "*/analog_information_decoding/code_construction/*",
+    "*/analog_information_decoding/utils/data_utils.py",
+
 ]
 extend-select = [
     "A",           # flake8-builtins

scripts/examples/atd_example.py

@@ -1,4 +1,4 @@
-""" example simulation script """
+"""example simulation script"""
 
 import numpy as np
 import scipy

src/mqt/qecc/__init__.py

@@ -23,19 +23,19 @@
 )
 
 __all__ = [
-    "__version__",
+    "AnalogTannergraphDecoder",
+    "AtdSimulator",
     "Code",
     "Decoder",
-    "UFHeuristic",
-    "UFDecoder",
-    "GrowthVariant",
     "DecodingResult",
     "DecodingResultStatus",
     "DecodingRunInformation",
-    "sample_iid_pauli_err",
-    "apply_ecc",
-    "AnalogTannergraphDecoder",
-    "AtdSimulator",
+    "GrowthVariant",
     # "SoftInfoDecoder",
     "QssSimulator",
+    "UFDecoder",
+    "UFHeuristic",
+    "__version__",
+    "apply_ecc",
+    "sample_iid_pauli_err",
 ]

src/mqt/qecc/analog_information_decoding/utils/simulation_utils.py

@@ -33,7 +33,7 @@ def alist2numpy(fname: str) -> NDArray[np.int32]:  # current original implementa
     for i in range(m):
         columns = [item for item in alist_file[i + 4].split() if item.isdigit()]
         columns_two: NDArray[np.int32] = np.array(columns, dtype=np.int32)
-        columns_two = columns_two - 1  # convert to zero indexing
+        columns_two -= 1  # convert to zero indexing
         mat[i, columns_two] = 1
 
     return mat
@@ -98,7 +98,7 @@ def generate_err(
     residual_err_z = residual_err[1]
 
     for i in range(nr_qubits):
-        rand = np.random.random()  # this returns a random float in [0,1)
+        rand = np.random.default_rng().random()  # this returns a random float in [0,1)
         # e.g. if err channel is p = 0.3, then an error will be applied if rand < p
         if rand < channel_probs_z[i]:  # if probability for z error high enough, rand < p, apply
             # if there is a z error on the i-th bit, flip the bit but take residual error into account
@@ -165,7 +165,7 @@ def generate_syndr_err(channel_probs: NDArray[np.float64]) -> NDArray[np.int32]:
     error: NDArray[np.int32] = np.zeros_like(channel_probs, dtype=np.int32)
 
     for i, p in np.ndenumerate(channel_probs):
-        rand = np.random.random()
+        rand = np.random.default_rng().random()
 
         if rand < p:
             error[i] = 1

src/mqt/qecc/cc_decoder/__init__.py

@@ -19,10 +19,10 @@ def code_from_string(lattice_type: str, distance: int) -> ColorCode:
 
 
 __all__ = [
-    "tn_decoder",
-    "HexagonalColorCode",
     "ColorCode",
+    "HexagonalColorCode",
     "LatticeType",
     "SquareOctagonColorCode",
     "code_from_string",
+    "tn_decoder",
 ]

src/mqt/qecc/cc_decoder/decoder.py

@@ -4,7 +4,7 @@
 
 import datetime
 import json
-import subprocess
+import subprocess  # noqa: S404
 from dataclasses import dataclass, field
 from pathlib import Path
 from typing import TYPE_CHECKING, Any