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Remove race condition between different evaluation periods by deleting Parameters parameter from evaluateMeasure(). #556

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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,6 @@
import java.util.List;
import java.util.Objects;
import org.hl7.elm.r1.VersionedIdentifier;
import org.hl7.fhir.instance.model.api.IBaseParameters;
import org.opencds.cqf.cql.engine.execution.CqlEngine;
import org.opencds.cqf.cql.engine.runtime.Interval;
import org.opencds.cqf.fhir.cql.LibraryEngine;
Expand All @@ -17,7 +16,6 @@ public abstract class BaseMeasureEvaluation<MeasureT, MeasureReportT, SubjectT>
protected MeasureT measure;
protected LibraryEngine libraryEngine;
protected String measurementPeriodParameterName;
protected IBaseParameters parameters;
protected VersionedIdentifier versionIdentifier;

protected BaseMeasureEvaluation(
Expand All @@ -26,17 +24,15 @@ protected BaseMeasureEvaluation(
MeasureDefBuilder<MeasureT> measureDefBuilder,
MeasureReportBuilder<MeasureT, MeasureReportT, SubjectT> measureReportBuilder,
LibraryEngine libraryEngine,
VersionedIdentifier versionIdentifier,
IBaseParameters parameters) {
VersionedIdentifier versionIdentifier) {
this(
context,
measure,
measureDefBuilder,
measureReportBuilder,
MeasureConstants.MEASUREMENT_PERIOD_PARAMETER_NAME,
libraryEngine,
versionIdentifier,
parameters);
versionIdentifier);
}

protected BaseMeasureEvaluation(
Expand All @@ -46,8 +42,7 @@ protected BaseMeasureEvaluation(
MeasureReportBuilder<MeasureT, MeasureReportT, SubjectT> measureReportBuilder,
String measurementPeriodParameterName,
LibraryEngine libraryEngine,
VersionedIdentifier versionIdentifier,
IBaseParameters parameters) {
VersionedIdentifier versionIdentifier) {
this.context = Objects.requireNonNull(context, "context is a required argument");
this.measure = Objects.requireNonNull(measure, "measure is a required argument");
this.measureDefBuilder = Objects.requireNonNull(measureDefBuilder, "measureDefBuilder is a required argument");
Expand All @@ -56,34 +51,30 @@ protected BaseMeasureEvaluation(
this.measurementPeriodParameterName = Objects.requireNonNull(
measurementPeriodParameterName, "measurementPeriodParameterName is a required argument");
this.libraryEngine = libraryEngine;
this.parameters = parameters;
this.versionIdentifier = versionIdentifier;
}

public MeasureReportT evaluate(
MeasureEvalType measureEvalType,
List<String> subjectIds,
LibraryEngine libraryEngine,
VersionedIdentifier id,
IBaseParameters parameters) {
return this.evaluate(measureEvalType, subjectIds, null, libraryEngine, id, parameters);
VersionedIdentifier id) {
return this.evaluate(measureEvalType, subjectIds, null, libraryEngine, id);
}

public MeasureReportT evaluate(
MeasureEvalType measureEvalType,
List<String> subjectIds,
Interval measurementPeriod,
LibraryEngine libraryEngine,
VersionedIdentifier id,
IBaseParameters parameters) {
VersionedIdentifier id) {
Objects.requireNonNull(subjectIds, "subjectIds is a required parameter");
Objects.requireNonNull(measureEvalType, "measureEvalType is a required parameter");

MeasureDef measureDef = this.measureDefBuilder.build(measure);
MeasureEvaluator measureEvaluation =
new MeasureEvaluator(context, this.measurementPeriodParameterName, libraryEngine);
measureDef =
measureEvaluation.evaluate(measureDef, measureEvalType, subjectIds, measurementPeriod, parameters, id);
measureDef = measureEvaluation.evaluate(measureDef, measureEvalType, subjectIds, measurementPeriod, id);

Interval measurementPeriodInterval;
if (measurementPeriod == null) {
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,6 @@
import org.hl7.elm.r1.NamedTypeSpecifier;
import org.hl7.elm.r1.ParameterDef;
import org.hl7.elm.r1.VersionedIdentifier;
import org.hl7.fhir.instance.model.api.IBaseParameters;
import org.opencds.cqf.cql.engine.execution.CqlEngine;
import org.opencds.cqf.cql.engine.execution.EvaluationResult;
import org.opencds.cqf.cql.engine.execution.ExpressionResult;
Expand Down Expand Up @@ -83,7 +82,6 @@ public MeasureDef evaluate(
MeasureEvalType measureEvalType,
List<String> subjectIds,
@Nullable Interval measurementPeriod,
IBaseParameters parameters,
VersionedIdentifier versionedIdentifier) {
Objects.requireNonNull(measureDef, "measureDef is a required argument");
Objects.requireNonNull(subjectIds, "subjectIds is a required argument");
Expand All @@ -97,37 +95,17 @@ public MeasureDef evaluate(
case PATIENT:
case SUBJECT:
return this.evaluate(
measureDef,
MeasureReportType.INDIVIDUAL,
subjectIds,
parameters,
versionedIdentifier,
zonedDateTime);
measureDef, MeasureReportType.INDIVIDUAL, subjectIds, versionedIdentifier, zonedDateTime);
case SUBJECTLIST:
return this.evaluate(
measureDef,
MeasureReportType.SUBJECTLIST,
subjectIds,
parameters,
versionedIdentifier,
zonedDateTime);
measureDef, MeasureReportType.SUBJECTLIST, subjectIds, versionedIdentifier, zonedDateTime);
case PATIENTLIST:
// DSTU3 Only
return this.evaluate(
measureDef,
MeasureReportType.PATIENTLIST,
subjectIds,
parameters,
versionedIdentifier,
zonedDateTime);
measureDef, MeasureReportType.PATIENTLIST, subjectIds, versionedIdentifier, zonedDateTime);
case POPULATION:
return this.evaluate(
measureDef,
MeasureReportType.SUMMARY,
subjectIds,
parameters,
versionedIdentifier,
zonedDateTime);
measureDef, MeasureReportType.SUMMARY, subjectIds, versionedIdentifier, zonedDateTime);
default:
// never hit because this value is set upstream
throw new IllegalArgumentException(
Expand Down Expand Up @@ -300,7 +278,6 @@ protected MeasureDef evaluate(
MeasureDef measureDef,
MeasureReportType type,
List<String> subjectIds,
IBaseParameters parameters,
VersionedIdentifier id,
ZonedDateTime zonedDateTime) {
var subjectSize = subjectIds.size();
Expand All @@ -321,8 +298,8 @@ protected MeasureDef evaluate(
String subjectIdPart = subjectInfo.getRight();
context.getState().setContextValue(subjectTypePart, subjectIdPart);

EvaluationResult result = libraryEngine.getEvaluationResult(
id, subjectId, parameters, null, null, null, zonedDateTime, context);
EvaluationResult result =
libraryEngine.getEvaluationResult(id, subjectId, null, null, null, null, zonedDateTime, context);

evaluateSubject(measureDef, subjectTypePart, subjectIdPart, subjectSize, type, result);
}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@
import org.hl7.fhir.dstu3.model.DomainResource;
import org.hl7.fhir.dstu3.model.Measure;
import org.hl7.fhir.dstu3.model.MeasureReport;
import org.hl7.fhir.dstu3.model.Parameters;
import org.opencds.cqf.cql.engine.execution.CqlEngine;
import org.opencds.cqf.fhir.cql.LibraryEngine;
import org.opencds.cqf.fhir.cr.measure.common.BaseMeasureEvaluation;
Expand All @@ -15,18 +14,13 @@
public class Dstu3MeasureEvaluation extends BaseMeasureEvaluation<Measure, MeasureReport, DomainResource> {

public Dstu3MeasureEvaluation(
CqlEngine context,
Measure measure,
LibraryEngine libraryEngine,
VersionedIdentifier versionIdentifier,
Parameters parameters) {
CqlEngine context, Measure measure, LibraryEngine libraryEngine, VersionedIdentifier versionIdentifier) {
super(
context,
measure,
new Dstu3MeasureDefBuilder(),
new Dstu3MeasureReportBuilder(),
libraryEngine,
versionIdentifier,
parameters);
versionIdentifier);
}
}
Original file line number Diff line number Diff line change
@@ -1,7 +1,5 @@
package org.opencds.cqf.fhir.cr.measure.dstu3;

import static org.opencds.cqf.fhir.cr.measure.constant.MeasureConstants.MEASUREMENT_PERIOD_PARAMETER_NAME;

import java.util.Arrays;
import java.util.HashMap;
import java.util.List;
Expand All @@ -12,13 +10,11 @@
import org.cqframework.cql.cql2elm.CqlIncludeException;
import org.cqframework.cql.cql2elm.model.CompiledLibrary;
import org.hl7.elm.r1.VersionedIdentifier;
import org.hl7.fhir.dstu3.model.DateTimeType;
import org.hl7.fhir.dstu3.model.IdType;
import org.hl7.fhir.dstu3.model.Library;
import org.hl7.fhir.dstu3.model.Measure;
import org.hl7.fhir.dstu3.model.MeasureReport;
import org.hl7.fhir.dstu3.model.Parameters;
import org.hl7.fhir.dstu3.model.Period;
import org.hl7.fhir.instance.model.api.IBaseBundle;
import org.hl7.fhir.instance.model.api.IPrimitiveType;
import org.opencds.cqf.cql.engine.fhir.model.Dstu3FhirModelResolver;
Expand Down Expand Up @@ -138,22 +134,8 @@ protected MeasureReport evaluateMeasure(
var subjects =
subjectProvider.getSubjects(actualRepo, evalType, subjectIds).collect(Collectors.toList());
var libraryEngine = new LibraryEngine(repository, this.measureEvaluationOptions.getEvaluationSettings());
var params = makeParameters(measurementPeriod);
Dstu3MeasureEvaluation measureEvaluator =
new Dstu3MeasureEvaluation(context, measure, libraryEngine, id, params);
return measureEvaluator.evaluate(evalType, subjects, measurementPeriod, libraryEngine, id, params);
}

public Parameters makeParameters(Interval measurementPeriod) {
Parameters parameters = new Parameters();
if (measurementPeriod != null) {

Period period = new Period();
period.setStartElement(new DateTimeType(measurementPeriod.getStart().toString()));
period.setEndElement(new DateTimeType(measurementPeriod.getEnd().toString()));
parameters.addParameter().setName(MEASUREMENT_PERIOD_PARAMETER_NAME).setValue(period);
}
return parameters;
Dstu3MeasureEvaluation measureEvaluator = new Dstu3MeasureEvaluation(context, measure, libraryEngine, id);
return measureEvaluator.evaluate(evalType, subjects, measurementPeriod, libraryEngine, id);
}

protected MeasureReportType evalTypeToReportType(MeasureEvalType measureEvalType) {
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@
import org.hl7.fhir.r4.model.DomainResource;
import org.hl7.fhir.r4.model.Measure;
import org.hl7.fhir.r4.model.MeasureReport;
import org.hl7.fhir.r4.model.Parameters;
import org.opencds.cqf.cql.engine.execution.CqlEngine;
import org.opencds.cqf.fhir.cql.LibraryEngine;
import org.opencds.cqf.fhir.cr.measure.common.BaseMeasureEvaluation;
Expand All @@ -15,18 +14,13 @@
public class R4MeasureEvaluation extends BaseMeasureEvaluation<Measure, MeasureReport, DomainResource> {

public R4MeasureEvaluation(
CqlEngine context,
Measure measure,
LibraryEngine libraryEngine,
VersionedIdentifier versionIdentifier,
Parameters parameters) {
CqlEngine context, Measure measure, LibraryEngine libraryEngine, VersionedIdentifier versionIdentifier) {
super(
context,
measure,
new R4MeasureDefBuilder(),
new R4MeasureReportBuilder(),
libraryEngine,
versionIdentifier,
parameters);
versionIdentifier);
}
}
Original file line number Diff line number Diff line change
@@ -1,7 +1,5 @@
package org.opencds.cqf.fhir.cr.measure.r4;

import static org.opencds.cqf.fhir.cr.measure.constant.MeasureConstants.MEASUREMENT_PERIOD_PARAMETER_NAME;

import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
import jakarta.annotation.Nullable;
import java.time.ZonedDateTime;
Expand Down Expand Up @@ -164,19 +162,8 @@ protected MeasureReport evaluateMeasure(
}
// Library Evaluate
var libraryEngine = new LibraryEngine(repository, this.measureEvaluationOptions.getEvaluationSettings());
var params = makeParameters(measurementPeriod);
R4MeasureEvaluation measureEvaluator = new R4MeasureEvaluation(context, measure, libraryEngine, id, params);
return measureEvaluator.evaluate(evalType, subjectIds, measurementPeriod, libraryEngine, id, params);
}

public Parameters makeParameters(Interval measurementPeriod) {
Parameters parameters = new Parameters();
if (measurementPeriod != null) {
var helper = new R4DateHelper();
parameters.setParameter(
MEASUREMENT_PERIOD_PARAMETER_NAME, helper.buildMeasurementPeriod(measurementPeriod));
}
return parameters;
R4MeasureEvaluation measureEvaluator = new R4MeasureEvaluation(context, measure, libraryEngine, id);
return measureEvaluator.evaluate(evalType, subjectIds, measurementPeriod, libraryEngine, id);
}

protected Measure resolveByUrl(CanonicalType url) {
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@
import org.opencds.cqf.cql.engine.runtime.Date;
import org.opencds.cqf.cql.engine.runtime.DateTime;
import org.opencds.cqf.cql.engine.runtime.Interval;
import org.opencds.cqf.cql.engine.runtime.Precision;

public class R4DateHelper {

Expand Down Expand Up @@ -38,6 +39,8 @@ public Period buildMeasurementPeriod(Interval measurementPeriodInterval) {

private DateTime convertToDateTime(ZonedDateTime zonedDateTime) {
final OffsetDateTime offsetDateTime = zonedDateTime.toOffsetDateTime();
return new DateTime(offsetDateTime);
final DateTime convertedDateTime = new DateTime(offsetDateTime);
convertedDateTime.setPrecision(Precision.SECOND);
return convertedDateTime;
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}
}
Original file line number Diff line number Diff line change
Expand Up @@ -244,14 +244,13 @@ private MeasureReport runTest(
var lib = engine.getEnvironment().getLibraryManager().resolveLibrary(id);
engine.getState().init(lib.getLibrary());
var libraryEngine = new LibraryEngine(repository, this.evaluationOptions.getEvaluationSettings());
Dstu3MeasureEvaluation evaluation = new Dstu3MeasureEvaluation(engine, measure, libraryEngine, id, null);
Dstu3MeasureEvaluation evaluation = new Dstu3MeasureEvaluation(engine, measure, libraryEngine, id);
MeasureReport report = evaluation.evaluate(
subjectIds.size() == 1 ? MeasureEvalType.PATIENT : MeasureEvalType.POPULATION,
subjectIds,
measurementPeriod,
libraryEngine,
id,
null);
id);
assertNotNull(report);

// Simulate sending it across the wire
Expand Down
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