v1.0.4

Updated AssemblyPostProcessor to work with TransDecoder v5.5.0

v1.0.3

Input/output and option enhancements to all the tools

v1.0.2

Removed redirection of stderr to /dev/null on system call to assist with capturing error messages for debugging external dependent tools.

v1.0.1

Amended parsing of TransDecoder v3.01 accessions

v1.0.0

This is the initial stable release of PlantTribes pipelines with major changes. Also used in the development of Galaxy PlantTribes

v0.8

Updated dependencies for KaKsAnlysis pipeline and add --config_dir parameter option.

v0.7

Addition KaKsAnalysis pipeline to PlantTribes

v0.6

Various pipeline fixes

v0.5

1). Allow optionally passing in path to config changes in all the three pipelines.

2). PASTA error handling in the in the Phylogenomics pipeline.

v0.4

Fixed AssemblyPostProcessor to parse TransDecoder version 3.0.1 output