Port patches from 1.0.0 branch

CMakeLists.txt

@@ -1,5 +1,5 @@
 cmake_minimum_required(VERSION 3.12)
-project(xgboost LANGUAGES CXX C VERSION 1.0.0)
+project(xgboost LANGUAGES CXX C VERSION 1.1.0)
 include(cmake/Utils.cmake)
 list(APPEND CMAKE_MODULE_PATH "${xgboost_SOURCE_DIR}/cmake/modules")
 cmake_policy(SET CMP0022 NEW)

Jenkinsfile

@@ -273,6 +273,7 @@ def TestPythonCPU() {
     def docker_binary = "docker"
     sh """
     ${dockerRun} ${container_type} ${docker_binary} tests/ci_build/test_python.sh cpu
+    ${dockerRun} ${container_type} ${docker_binary} tests/ci_build/test_python.sh cpu-py35
     """
     deleteDir()
   }

R-package/DESCRIPTION

@@ -1,8 +1,8 @@
 Package: xgboost
 Type: Package
 Title: Extreme Gradient Boosting
-Version: 1.0.0.1
-Date: 2019-07-23
+Version: 1.1.0.1
+Date: 2020-02-21
 Authors@R: c(
   person("Tianqi", "Chen", role = c("aut"),
          email = "tianqi.tchen@gmail.com"),

doc/model.schema

@@ -195,12 +195,22 @@
   "properties": {
     "version": {
       "type": "array",
-      "const": [
-        1,
-        0,
-        0
+      "items": [
+        {
+          "type": "number",
+          "const": 1
+        },
+        {
+          "type": "number",
+          "minimum": 0
+        },
+        {
+          "type": "number",
+          "minimum": 0
+        }
       ],
-      "additionalItems": false
+      "minItems": 3,
+      "maxItems": 3
     },
     "learner": {
       "type": "object",

include/xgboost/version_config.h

@@ -5,7 +5,7 @@
 #define XGBOOST_VERSION_CONFIG_H_
 
 #define XGBOOST_VER_MAJOR 1
-#define XGBOOST_VER_MINOR 0
+#define XGBOOST_VER_MINOR 1
 #define XGBOOST_VER_PATCH 0
 
 #endif  // XGBOOST_VERSION_CONFIG_H_

jvm-packages/pom.xml

@@ -6,7 +6,7 @@
 
     <groupId>ml.dmlc</groupId>
     <artifactId>xgboost-jvm_2.12</artifactId>
-    <version>1.0.0-SNAPSHOT</version>
+    <version>1.1.0-SNAPSHOT</version>
     <packaging>pom</packaging>
     <name>XGBoost JVM Package</name>
     <description>JVM Package for XGBoost</description>

jvm-packages/xgboost4j-example/pom.xml

@@ -6,10 +6,10 @@
     <parent>
         <groupId>ml.dmlc</groupId>
         <artifactId>xgboost-jvm_2.12</artifactId>
-        <version>1.0.0-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <artifactId>xgboost4j-example_2.12</artifactId>
-    <version>1.0.0-SNAPSHOT</version>
+    <version>1.1.0-SNAPSHOT</version>
     <packaging>jar</packaging>
     <build>
         <plugins>
@@ -26,7 +26,7 @@
         <dependency>
             <groupId>ml.dmlc</groupId>
             <artifactId>xgboost4j-spark_${scala.binary.version}</artifactId>
-            <version>1.0.0-SNAPSHOT</version>
+            <version>1.1.0-SNAPSHOT</version>
         </dependency>
         <dependency>
             <groupId>org.apache.spark</groupId>
@@ -37,7 +37,7 @@
         <dependency>
             <groupId>ml.dmlc</groupId>
             <artifactId>xgboost4j-flink_${scala.binary.version}</artifactId>
-            <version>1.0.0-SNAPSHOT</version>
+            <version>1.1.0-SNAPSHOT</version>
         </dependency>
         <dependency>
             <groupId>org.apache.commons</groupId>

jvm-packages/xgboost4j-flink/pom.xml

@@ -6,10 +6,10 @@
     <parent>
         <groupId>ml.dmlc</groupId>
         <artifactId>xgboost-jvm_2.12</artifactId>
-        <version>1.0.0-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <artifactId>xgboost4j-flink_2.12</artifactId>
-    <version>1.0.0-SNAPSHOT</version>
+    <version>1.1.0-SNAPSHOT</version>
     <build>
         <plugins>
             <plugin>
@@ -26,7 +26,7 @@
         <dependency>
             <groupId>ml.dmlc</groupId>
             <artifactId>xgboost4j_${scala.binary.version}</artifactId>
-            <version>1.0.0-SNAPSHOT</version>
+            <version>1.1.0-SNAPSHOT</version>
         </dependency>
         <dependency>
             <groupId>org.apache.commons</groupId>

jvm-packages/xgboost4j-spark/pom.xml

@@ -6,7 +6,7 @@
     <parent>
         <groupId>ml.dmlc</groupId>
         <artifactId>xgboost-jvm_2.12</artifactId>
-        <version>1.0.0-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <artifactId>xgboost4j-spark_2.12</artifactId>
     <build>
@@ -24,7 +24,7 @@
         <dependency>
             <groupId>ml.dmlc</groupId>
             <artifactId>xgboost4j_${scala.binary.version}</artifactId>
-            <version>1.0.0-SNAPSHOT</version>
+            <version>1.1.0-SNAPSHOT</version>
         </dependency>
         <dependency>
             <groupId>org.apache.spark</groupId>

jvm-packages/xgboost4j/pom.xml

@@ -6,10 +6,10 @@
     <parent>
         <groupId>ml.dmlc</groupId>
         <artifactId>xgboost-jvm_2.12</artifactId>
-        <version>1.0.0-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <artifactId>xgboost4j_2.12</artifactId>
-    <version>1.0.0-SNAPSHOT</version>
+    <version>1.1.0-SNAPSHOT</version>
     <packaging>jar</packaging>
 
     <dependencies>

python-package/xgboost/VERSION

@@ -1 +1 @@
-1.0.0-SNAPSHOT
+1.1.0-SNAPSHOT

python-package/xgboost/__init__.py

@@ -5,6 +5,8 @@
 """
 
 import os
+import sys
+import warnings
 
 from .core import DMatrix, Booster
 from .training import train, cv
@@ -19,6 +21,12 @@
 except ImportError:
     pass
 
+if sys.version_info[:2] == (3, 5):
+    warnings.warn(
+        'Python 3.5 support is deprecated; XGBoost will require Python 3.6+ in the near future. ' +
+        'Consider upgrading to Python 3.6+.',
+        FutureWarning)
+
 VERSION_FILE = os.path.join(os.path.dirname(__file__), 'VERSION')
 with open(VERSION_FILE) as f:
     __version__ = f.read().strip()

python-package/xgboost/sklearn.py

@@ -423,8 +423,8 @@ def load_model(self, fname):
                 self.classes_ = np.array(v)
                 continue
             if k == 'type' and type(self).__name__ != v:
-                msg = f'Current model type: {type(self).__name__}, ' + \
-                    f'type of model in file: {v}'
+                msg = 'Current model type: {}, '.format(type(self).__name__) + \
+                      'type of model in file: {}'.format(v)
                 raise TypeError(msg)
             if k == 'type':
                 continue

tests/ci_build/Dockerfile.cpu

@@ -3,6 +3,7 @@ ARG CMAKE_VERSION=3.12
 
 # Environment
 ENV DEBIAN_FRONTEND noninteractive
+SHELL ["/bin/bash", "-c"]   # Use Bash as shell
 
 # Install all basic requirements
 RUN \
@@ -19,10 +20,16 @@ ENV PATH=/opt/python/bin:$PATH
 
 ENV GOSU_VERSION 1.10
 
-# Install Python packages
+# Create new Conda environment with Python 3.5
+RUN conda create -n py35 python=3.5 && \
+    source activate py35 && \
+    pip install numpy pytest scipy scikit-learn pandas matplotlib wheel kubernetes urllib3 graphviz && \
+    source deactivate
+
+# Install Python packages in default env
 RUN \
     pip install pyyaml cpplint pylint astroid sphinx numpy scipy pandas matplotlib sh \
-    		recommonmark guzzle_sphinx_theme mock breathe matplotlib graphviz \
+    		recommonmark guzzle_sphinx_theme mock breathe graphviz \
 		pytest scikit-learn wheel kubernetes urllib3 jsonschema boto3 && \
     pip install https://h2o-release.s3.amazonaws.com/datatable/stable/datatable-0.7.0/datatable-0.7.0-cp37-cp37m-linux_x86_64.whl && \
     pip install "dask[complete]"

tests/ci_build/test_python.sh

@@ -5,31 +5,35 @@ set -x
 suite=$1
 
 # Install XGBoost Python package
-wheel_found=0
-for file in python-package/dist/*.whl
-do
-  if [ -e "${file}" ]
+function install_xgboost {
+  wheel_found=0
+  for file in python-package/dist/*.whl
+  do
+    if [ -e "${file}" ]
+    then
+      pip install --user "${file}"
+      wheel_found=1
+      break  # need just one
+    fi
+  done
+  if [ "$wheel_found" -eq 0 ]
   then
-    pip install --user "${file}"
-    wheel_found=1
-    break  # need just one
+    pushd .
+    cd python-package
+    python setup.py install --user
+    popd
   fi
-done
-if [ "$wheel_found" -eq 0 ]
-then
-  pushd .
-  cd python-package
-  python setup.py install --user
-  popd
-fi
+}
 
 # Run specified test suite
 case "$suite" in
   gpu)
+    install_xgboost
     pytest -v -s --fulltrace -m "not mgpu" tests/python-gpu
     ;;
 
   mgpu)
+    install_xgboost
     pytest -v -s --fulltrace -m "mgpu" tests/python-gpu
     cd tests/distributed
     ./runtests-gpu.sh
@@ -39,17 +43,25 @@ case "$suite" in
 
   cudf)
     source activate cudf_test
+    install_xgboost
     pytest -v -s --fulltrace -m "not mgpu" tests/python-gpu/test_from_columnar.py tests/python-gpu/test_from_cupy.py
     ;;
 
   cpu)
+    install_xgboost
     pytest -v -s --fulltrace tests/python
     cd tests/distributed
     ./runtests.sh
     ;;
 
+  cpu-py35)
+    source activate py35
+    install_xgboost
+    pytest -v -s --fulltrace tests/python
+    ;;
+
   *)
-    echo "Usage: $0 {gpu|mgpu|cudf|cpu}"
+    echo "Usage: $0 {gpu|mgpu|cudf|cpu|cpu-py35}"
     exit 1
     ;;
 esac

tests/cpp/common/test_version.cc

@@ -54,7 +54,7 @@ TEST(Version, Basic) {
 
   ptr = 0;
   v = std::stoi(str, &ptr);
-  ASSERT_EQ(v, XGBOOST_VER_MINOR) << "patch: " << v;;
+  ASSERT_EQ(v, XGBOOST_VER_PATCH) << "patch: " << v;;
 
   str = str.substr(ptr);
   ASSERT_EQ(str.size(), 0);