v0.7.10

Buildable Source Tarball: seqwish-v0.7.10.tar.gz

What's Changed

• make newer gcc happy by @AndreaGuarracino in #113

Full Changelog: v0.7.9...v0.7.10

seqwish 0.7.9 - Versione

Buildable Source Tarball: seqwish-v0.7.9.tar.gz

This fixes the versioning #110 by @AndreaGuarracino

seqwish 0.7.8 - Bisperanza

Buildable Source Tarball: seqwish-v0.7.8.tar.gz

Minor changes. This release is used to update the conda release.

This:

• always emits long version format #107 by @AndreaGuarracino

seqwish 0.7.7 - Speranza

Buildable Source Tarball: seqwish-v0.7.7.tar.gz

This:

• fixes the build for Linux ARM64 #99 by @julien-faye
• fixes the compilation with new compilers #102 by @AndreaGuarracino
• generalizes the compilation for aarch64 #104 by @AndreaGuarracino
• adds instructions in the README about how to build seqwish with clang #105 by @AndreaGuarracino
• makes it possible to overwrite -march=native with, for example, -DEXTRA_FLAGS="-march=armv8-a". It is very useful for ARM systems #106 by @martin-g

seqwish 0.7.6 - Temporaneo

Buildable Source Tarball: seqwish-v0.7.6.tar.gz

This introduces temporary directory management and little cleaning (#96).

seqwish 0.7.5 - Pasticcione

Buildable Source Tarball: seqwish-v0.7.5.tar.gz

This introduces:

• updates in how seqwish is compiled/built to ensure greater inter-system compatibility;
• world min-hash sparsification for input matches.

seqwish 0.7.4 - Rifinitura

Buildable Source Tarball: seqwish-v0.7.4.tar.gz

This fixes a bug in the versioning and updates the args dependency.

seqwish 0.7.3 - Veloce

Buildable Source Tarball: seqwish-v0.7.3.tar.gz

• This parallelizes the two steps that had become the bottlenecks of the whole process, resulting in a runtime improvement of ~30/40% (#88).
• The version of the tool can be displayed with seqwish --version (#89)

seqwish 0.7.2 - Diffidenza

Buildable Source Tarball: seqwish-v0.7.2.tar.gz

• seqwish checks that the input PAF lines are valid (#79).

seqwish 0.7.1 - Sicurezza

Buildable Source Tarball: seqwish-v0.7.1.tar.gz

• This fixes segmentation faults due to empty input PAF files (#74) or empty sequences in input FASTA files (#76).
• The mmmap_allocator dependency was removed (#76).
• seqwish became a bit safer, distrusting CIGAR mismatch characters (#77), thus checking the input sequences.
• Jemalloc is used (#78) as a new memory allocator to tackle memory fragmentation and support scalable concurrency.
• seqwish doesn't close through Ns, not collapsing them anymore (#80).