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Support for userdefined prefixes #439

Merged
merged 23 commits into from
Aug 17, 2022
Merged

Support for userdefined prefixes #439

merged 23 commits into from
Aug 17, 2022

Commits on Aug 11, 2022

  1. Use prefix as arguemnt instead of namespace in get_by_label 

    Changed argument to prefix in get_by_label and get_by_label_all
when only entities from a given ontology with a given prefix are
desired. The prefix is currently being compared to entity._namspace.name
but a solution for prefix should be implemented.
    @francescalb
    francescalb committed Aug 11, 2022
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  2. Updated documentation with prefix for get_by_label

    @francescalb
    francescalb committed Aug 11, 2022
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  3. Added automatic detection of prefix for the loaded ontology and tests

    @francescalb
    francescalb committed Aug 11, 2022
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  4. Corrected to that prefix actually cahcek for the prefix of the ontology 

    where the entity is from and not the name of the namespace as given in
owldreay2
    @francescalb
    francescalb committed Aug 11, 2022
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  5. Added support for get_by_label('prefix:entity')

    @francescalb
    francescalb committed Aug 11, 2022
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Commits on Aug 12, 2022

  1. Updated docstring of get_by_label

    @francescalb
    francescalb committed Aug 12, 2022
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Commits on Aug 16, 2022

  1. Merge branch 'master' into flb/fix-prefix

    @francescalb
    francescalb committed Aug 16, 2022
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Commits on Aug 17, 2022

  1. Added testonto to fixtures. This revealed a different issue that should 

    be adressed separately. Test will fail.
    @francescalb
    francescalb committed Aug 17, 2022
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  2. Removed dependency on pydot

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  3. Apply suggestions from code review 

    Co-authored-by: Francesca L. Bleken <48128015+francescalb@users.noreply.github.com>
    @jesper-friis @francescalb
    jesper-friis and francescalb committed Aug 17, 2022
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  4. Removed pydot from requirements

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  5. Merge branch 'remove_pydot' into flb/fix-prefix

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  6. Updated so that label_annotations are taken care of even if load is not 

    called
    @francescalb
    francescalb committed Aug 17, 2022
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  7. Merge branch 'flb/fix-prefix' of github.com:emmo-repo/EMMO-python int… 

    …o flb/fix-prefix
    @jesper-friis
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  8. Removed old test_graph.py

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  9. Updated Ontology.get_unabbreviated_triples() to match changes in 

    World.get_unabbreviated_triples()
    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  10. Changes form pylint and blacken

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  11. Removed ontopy/ontograph.py

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  12. Removed docs for deleted ontograph

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  13. Fixed indentation in documentation

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  14. Typo in docstring

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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  15. Put prefix in init for Ontology and added emmo prefix tests

    @francescalb
    francescalb committed Aug 17, 2022
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  16. Added asserts

    @jesper-friis
    jesper-friis committed Aug 17, 2022
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