Update from 'EMMO-python' -> 'EMMOntoPy'

.github/utils/release_tag_msg.txt

@@ -1,7 +1,7 @@
 TAG_NAME
 
 See the
-[versioned online documentation](https://emmo-repo.github.io/EMMO-python/TAG_NAME)
+[versioned online documentation](https://emmo-repo.github.io/EMMOntoPy/TAG_NAME)
 for more information.
 The full changelog can be seen
-[here](https://emmo-repo.github.io/EMMO-python/TAG_NAME/CHANGELOG).
+[here](https://emmo-repo.github.io/EMMOntoPy/TAG_NAME/CHANGELOG).

.github/utils/single_dependency_pr_body.txt

@@ -1,8 +1,8 @@
 ### Update dependencies
 
-Automatically created PR from [`ci/dependabot-updates`](https://github.com/emmo-repo/EMMO-python/tree/ci/dependabot-updates).
+Automatically created PR from [`ci/dependabot-updates`](https://github.com/emmo-repo/EMMOntoPy/tree/ci/dependabot-updates).
 
-For more information see the ["Dependabot updates" workflow](https://github.com/emmo-repo/EMMO-python/blob/master/.github/workflows/ci_dependabot.yml).
+For more information see the ["Dependabot updates" workflow](https://github.com/emmo-repo/EMMOntoPy/blob/master/.github/workflows/ci_dependabot.yml).
 
 #### To-do
 

.github/workflows/cd_publish.yml

@@ -12,7 +12,7 @@ env:
 jobs:
   update-and-publish:
     name: Update CHANGELOG and documentation
-    if: github.repository == 'emmo-repo/EMMO-python'
+    if: github.repository == 'emmo-repo/EMMOntoPy'
     runs-on: ubuntu-latest
 
     steps:

.github/workflows/ci_dependabot.yml

@@ -23,10 +23,10 @@ jobs:
       with:
         ref: master
 
-    - name: Set up Python 3.7
+    - name: Set up Python 3.8
       uses: actions/setup-python@v4
       with:
-        python-version: 3.7
+        python-version: "3.8"
 
     - name: Install `pre-commit` and dependencies
       run: |

.github/workflows/ci_workflow.yml

@@ -17,10 +17,10 @@ jobs:
     - name: Checkout repository
       uses: actions/checkout@v3
 
-    - name: Set up Python 3.7
+    - name: Set up Python 3.8
       uses: actions/setup-python@v4
       with:
-        python-version: 3.7
+        python-version: "3.8"
 
     - name: Install dependencies
       run: |

Dockerfile

@@ -4,9 +4,9 @@ RUN wget https://github.com/jgm/pandoc/releases/download/2.1.2/pandoc-2.1.2-1-am
 RUN pip install --upgrade pip
 
 RUN useradd -ms /bin/bash user
-COPY . /home/user/EMMO-python
-RUN cd /home/user/EMMO-python && pip install -e . && cd -
-RUN chown user:user -R /home/user/EMMO-python/
+COPY . /home/user/EMMOntoPy
+RUN cd /home/user/EMMOntoPy && pip install -e . && cd -
+RUN chown user:user -R /home/user/EMMOntoPy/
 USER user
 WORKDIR /home/user/
 #ENTRYPOINT python

README.md

@@ -6,7 +6,7 @@
 
 <!-- markdownlint-disable MD033 -->
 
-![CI tests](https://github.com/emmo-repo/EMMO-python/workflows/CI%20Tests/badge.svg)
+![CI tests](https://github.com/emmo-repo/EMMOntoPy/workflows/CI%20Tests/badge.svg)
 [![PyPI version](https://badge.fury.io/py/EMMOntoPy.svg)](https://badge.fury.io/py/EMMOntoPy)
 
 > ***Note**: EMMOntoPy is a continuation of the EMMO-python project and the associated `emmo` Python package.
@@ -75,7 +75,7 @@ Some examples of what you can do with EMMOntoPy includes:
 ## Documentation and examples
 
 The [Owlready2 documentation][Owlready2-doc] is a good starting point.
-The EMMOntoPy package also has its own [dedicated documentation](https://emmo-repo.github.io/EMMO-python).
+The EMMOntoPy package also has its own [dedicated documentation](https://emmo-repo.github.io/EMMOntoPy).
 
 This includes a few examples and demos:
 
@@ -160,7 +160,7 @@ It has mainly been developed by [SINTEF](https://www.sintef.no/), specifically:
   Grant Agreement No: 953167
   <img src="https://openmodel.ifam.fraunhofer.de/app/uploads/sites/2/2021/07/open-model-logo.png" width="90">
 
-[EMMOntoPy]: https://github.com/emmo-repo/EMMO-python/
+[EMMOntoPy]: https://github.com/emmo-repo/EMMOntoPy/
 [Owlready2]: https://pypi.org/project/Owlready2/
 [Owlready2-doc]: https://owlready2.readthedocs.io/
 [EMMO]: https://emmo-repo.github.io

docs/developers/setup.md

@@ -101,16 +101,16 @@ To install the package, please do **not** install from PyPI.
 Instead you should clone the repository from GitHub:
 
 ```console
-$ git clone https://github.com/emmo-repo/EMMO-python.git
+$ git clone https://github.com/emmo-repo/EMMOntoPy.git
 ```
 
 or, if you are using an SSH connection to GitHub, you can instead clone via:
 
 ```console
-$ git clone git@github.com:emmo-repo/EMMO-python.git
+$ git clone git@github.com:emmo-repo/EMMOntoPy.git
 ```
 
-Then enter into the newly cloned `EMMO-python` directory (`cd EMMO-python`) and run:
+Then enter into the newly cloned `EMMOntoPy` directory (`cd EMMOntoPy`) and run:
 
 ```console
 $ pip install -U -e .[dev]

docs/docker-instructions.md

@@ -3,13 +3,13 @@
 ## Clone project
 
 ```bash
-git clone git@github.com:emmo-repo/EMMO-python.git
+git clone git@github.com:emmo-repo/EMMOntoPy.git
 ```
 
 ## Build Docker image
 
 ```bash
-cd EMMO-python
+cd EMMOntoPy
 docker build -t emmo .
 ```
 
@@ -41,19 +41,19 @@ docker build -t emmomount -f mount.Dockerfile .
 In a unix terminal (Linux)
 
 ```bash
-docker run --rm -it -v $(pwd):/home/user/EMMO-python emmomount
+docker run --rm -it -v $(pwd):/home/user/EMMOntoPy emmomount
 ```
 
 In PowerShell (Windows 10):
 
 ```PowerShell
-docker run --rm -it -v ${PWD}:/home/user/EMMO-python emmomount
+docker run --rm -it -v ${PWD}:/home/user/EMMOntoPy emmomount
 ```
 
 To install EMMOntoPy package inside container:
 
 ```bash
-cd EMMO-python
+cd EMMOntoPy
 pip install .
 ```
 

docs/index.md

@@ -6,7 +6,7 @@
 
 <!-- markdownlint-disable MD033 -->
 
-![CI tests](https://github.com/emmo-repo/EMMO-python/workflows/CI%20Tests/badge.svg)
+![CI tests](https://github.com/emmo-repo/EMMOntoPy/workflows/CI%20Tests/badge.svg)
 [![PyPI version](https://badge.fury.io/py/EMMOntoPy.svg)](https://badge.fury.io/py/EMMOntoPy)
 
 > ***Note**: EMMOntoPy is a continuation of the EMMO-python project and the associated `emmo` Python package.
@@ -75,7 +75,7 @@ Some examples of what you can do with EMMOntoPy includes:
 ## Documentation and examples
 
 The [Owlready2 documentation][Owlready2-doc] is a good starting point.
-The EMMOntoPy package also has its own [dedicated documentation](https://emmo-repo.github.io/EMMO-python).
+The EMMOntoPy package also has its own [dedicated documentation](https://emmo-repo.github.io/EMMOntoPy).
 
 This includes a few examples and demos:
 
@@ -160,7 +160,7 @@ It has mainly been developed by [SINTEF](https://www.sintef.no/), specifically:
   Grant Agreement No: 953167
   <img src="https://openmodel.ifam.fraunhofer.de/app/uploads/sites/2/2021/07/open-model-logo.png" width="90">
 
-[EMMOntoPy]: https://github.com/emmo-repo/EMMO-python/
+[EMMOntoPy]: https://github.com/emmo-repo/EMMOntoPy/
 [Owlready2]: https://pypi.org/project/Owlready2/
 [Owlready2-doc]: https://owlready2.readthedocs.io/
 [EMMO]: https://emmo-repo.github.io

docs/tools-instructions.md

@@ -344,7 +344,7 @@ ontoconvert --recursive emmo.ttl owl/emmo.owl
 ontoconvert --inferred emmo.ttl emmo-inferred.owl
 ```
 
-Note, it is then required to add the argument `only_local=True` when loading the locally converted ontology in EMMO-python, e.g.:
+Note, it is then required to add the argument `only_local=True` when loading the locally converted ontology in EMMOntoPy, e.g.:
 
 ```python
 from ontopy import get_ontology

examples/emmodoc/introduction.md

@@ -541,7 +541,7 @@ Possible annotations are:
 [Manchester_OWL]: http://ceur-ws.org/Vol-216/submission_9.pdf
 [Owlready2]: https://pythonhosted.org/Owlready2/
 [Lamy2017]: http://www.lesfleursdunormal.fr/_downloads/article_owlready_aim_2017.pdf
-[EMMOntoPy]: https://github.com/emmo-repo/EMMO-python
+[EMMOntoPy]: https://github.com/emmo-repo/EMMOntoPy
 [Great_table_of_DL]: http://www.lesfleursdunormal.fr/static/_downloads/great_ontology_table.pdf
 [universal_restriction]: https://en.wikipedia.org/wiki/Universal_quantifier
 [existential_restriction]: https://en.wikipedia.org/wiki/Universal_quantifier

examples/jupyter-visualization/README.md

@@ -8,7 +8,7 @@ In a terminal, run:
 cd /path/to/env/dirs
 python -m venv cytopy  # cytopy is my name, you can choose what ouy want
 source cytopy/bin/activate
-cd /dir/to/EMMO-python/
+cd /dir/to/EMMOntoPy/
 pip install -e .
 pip install jupyterlab
 python -m ipykernel install --user --name=cytopy

mkdocs.yml

@@ -1,6 +1,6 @@
 site_name: EMMOntoPy
 site_description: Documentation for the EMMOntoPy library
-site_url: https://emmo-repo.github.io/EMMO-python
+site_url: https://emmo-repo.github.io/EMMOntoPy
 copyright: Copyright © 2019-2021 SINTEF
 
 theme:
@@ -18,8 +18,8 @@ theme:
     - navigation.instant
     - navigation.top
 
-repo_name: EMMO-python
-repo_url: https://github.com/emmo-repo/EMMO-python
+repo_name: EMMOntoPy
+repo_url: https://github.com/emmo-repo/EMMOntoPy
 edit_uri: ""
 
 extra:

ontopy/__init__.py

@@ -2,7 +2,7 @@
 # pylint: disable=wrong-import-position,wrong-import-order
 import sys
 
-__version__ = "0.3.3"
+__version__ = "0.3.1"
 
 # Ensure correct Python version
 if sys.version_info < (3, 6):

setup.py

@@ -25,7 +25,7 @@ def fglob(patt):
 
 # Read long description from README.md file replacing references to local
 # files to github urls
-BASE_URL = "https://raw.githubusercontent.com/emmo-repo/EMMO-python/master/"
+BASE_URL = "https://raw.githubusercontent.com/emmo-repo/EMMOntoPy/master/"
 with open(os.path.join(rootdir, "README.md"), "rt") as handle:
     long_description = re.sub(
         r"(\[[^]]+\])\(([^:)]+)\)", rf"\1({BASE_URL}\2)", handle.read()
@@ -80,7 +80,7 @@ def fglob(patt):
     ),
     long_description=long_description,
     long_description_content_type="text/markdown",
-    url="https://github.com/emmo-repo/EMMO-python",
+    url="https://github.com/emmo-repo/EMMOntoPy",
     license="BSD",
     python_requires=">=3.6.0",
     classifiers=[
@@ -117,18 +117,18 @@ def fglob(patt):
     },
     include_package_data=True,
     data_files=[
-        ("share/EMMO-python", ["README.md", "LICENSE.txt"]),
+        ("share/EMMOntoPy", ["README.md", "LICENSE.txt"]),
         (
-            "share/EMMO-python/examples/emmodoc",
+            "share/EMMOntoPy/examples/emmodoc",
             glob("examples/emmodoc/*.md")
             + glob("examples/emmodoc/*.yaml")
             + glob("examples/emmodoc/pandoc-*"),
         ),
         (
-            "share/EMMO-python/examples/emmodoc/figs",
+            "share/EMMOntoPy/examples/emmodoc/figs",
             fglob("examples/emmodoc/figs/*"),
         ),
-        # ('share/EMMO-python/examples', rglob('examples/**')),
-        ("share/EMMO-python/demo", rglob("demo/**")),
+        # ('share/EMMOntoPy/examples', rglob('examples/**')),
+        ("share/EMMOntoPy/demo", rglob("demo/**")),
     ],
 )

tools/ontodoc

@@ -40,7 +40,7 @@ def main(argv: list = None):
             "The easiest way to generate nice-looking documentation using "
             "pandoc is to copy the emmodoc example to the current directory "
             "and adapt it. See "
-            "https://github.com/emmo-repo/EMMO-python/tree/master/examples/"
+            "https://github.com/emmo-repo/EMMOntoPy/tree/master/examples/"
             "emmodoc for more info."
         ),
     )