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bug fix: return_likelihood check #333

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merged 1 commit into from
Dec 7, 2022
Merged

bug fix: return_likelihood check #333

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1 change: 1 addition & 0 deletions NEWS.md
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Original file line number Diff line number Diff line change
Expand Up @@ -68,6 +68,7 @@ estimates and are considered out of scope for `EpiNow2`. If finding useful conta
* Fixed a bug where `use_rt = FALSE` did not properly cancel user settings. By @sbfnk.
* Fixed a bug in `estimate_truncation` where phi was not initialised. By @sbfnk.
* Fixed a bug where `zero_threshold` was being ignored and so no post-processing was happening. To maintain backwards compatibility the default has been changed to `Inf` (i.e. no zero threshold). By @LloydChapman in #285.
* Fixed a bug where setting `obs_opts(return_likelihood = TRUE)` fails. By @sbfnk in #333.

# EpiNow2 1.3.2

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2 changes: 1 addition & 1 deletion inst/stan/estimate_infections.stan
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Expand Up @@ -141,7 +141,7 @@ generated quantities {
int imputed_reports[ot_h];
vector[estimate_r > 0 ? 0: ot_h] gen_R;
real r[ot_h];
vector[return_likelihood > 1 ? ot : 0] log_lik;
vector[return_likelihood ? ot : 0] log_lik;
if (estimate_r){
// estimate growth from estimated Rt
real set_gt_mean = (gt_mean_sd > 0 ? gt_mean[1] : gt_mean_mean);
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