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@funkelab

Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 77 56

  2. lsd lsd Public

    🌈

    Python 52 30

  3. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 27 17

  4. motile motile Public

    Multi-Object Tracker using Integer Linear Equations

    Python 27 5

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 21 1

  6. linajea linajea Public

    Python 17 7

Repositories

Showing 10 of 69 repositories
  • motile Public

    Multi-Object Tracker using Integer Linear Equations

    funkelab/motile’s past year of commit activity
    Python 27 MIT 5 19 3 Updated Nov 15, 2024
  • motile_napari_plugin Public

    A napari plugin for tracking with motile

    funkelab/motile_napari_plugin’s past year of commit activity
    Python 5 BSD-3-Clause 2 30 1 Updated Nov 14, 2024
  • spatial_graph Public

    A spatial graph datastructure for python

    funkelab/spatial_graph’s past year of commit activity
    C++ 3 MIT 1 3 1 Updated Nov 12, 2024
  • blinx_paper Public

    blinx paper

    funkelab/blinx_paper’s past year of commit activity
    TeX 0 1 0 0 Updated Nov 9, 2024
  • witty Public

    A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.

    funkelab/witty’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Nov 7, 2024
  • funlib.persistence Public

    Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

    funkelab/funlib.persistence’s past year of commit activity
    Python 3 MIT 9 5 2 Updated Nov 5, 2024
  • daisy Public

    Block-wise task scheduling for large nD volumes.

    funkelab/daisy’s past year of commit activity
    Python 27 MIT 17 4 1 Updated Oct 28, 2024
  • ilpy-feedstock Public
    funkelab/ilpy-feedstock’s past year of commit activity
    0 BSD-3-Clause 1 0 0 Updated Oct 25, 2024
  • ilpy Public

    Unified python wrappers for popular ILP solvers

    funkelab/ilpy’s past year of commit activity
    C++ 3 MIT 2 4 1 Updated Oct 25, 2024
  • motile_toolbox Public

    A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

    funkelab/motile_toolbox’s past year of commit activity
    Python 4 1 3 2 Updated Oct 18, 2024
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