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Gladstone Bioinformatics Workshops

All training materials are free to use by anyone at any time. Instructors regularly present these workshops at Gladstone and the UCSF Mission Bay Campus. Follow these links for upcoming Gladstone and Bakar sponsored events.

Learning Paths

Explore these curated sets of workshops to find the right path for you. Note that intermediate and advanced workshops require completion of earlier workshops before enrolling.

Biostats	Command Line	R Scripting
Statistics for biologists	Computer skills for data science	Data analysis using R

RNA-Seq	Network Biology	Pathway Analysis
RNA-Seq analysis	Network analysis and visualization	Pathway analysis and modeling

• Also check out the workshops offered by UCSF's Data Science Initiative.

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Statistics for Biologists

   Introduction to Experimental Design and Hypothesis Testing

    Statistics of Enrichment Analyses Methods

    Introduction to Linear Mixed Effects Models

Computer Skills for Data Science

    Introduction to Unix command line - part I

    Advanced Unix command line - part II

    Using git and GitHub

    Working on Wynton HPC

    Working with Biomedical Graph Databases

Machine Learning

    Machine Learning

Data Analysis Using R

    Introduction to R for data analysis

    Intermediate R for data visualization

RNA-Seq Analysis

    Introduction to RNA-Seq Analysis

    Intermediate RNA-Seq Analysis Using R

    Single cell RNA-Seq analysis

ATAC-Seq Analysis

    Single cell ATAC-Seq analysis Part 1

    Single cell ATAC-Seq analysis Part 2

Whole Genome and Exome Analysis

    Whole Genome Sequence Analysis

Network Analysis and Visualization

    Introduction to Cytoscape and Network Biology

    Intermediate Cytoscape for Omics Data Visualization

    Advanced Cytoscape Automation

Pathway Analysis and Modeling

    Introduction to Pathway Analysis

    Introduction to Pathway Analysis Using R

Introduction to Pathway Modeling