refactor: remove unused thread configuration options

kircherlab · Jul 16, 2024 · 1ca36e1 · 1ca36e1
1 parent 42e0e82
commit 1ca36e1
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diff --git a/workflow/rules/assignment.smk b/workflow/rules/assignment.smk
@@ -138,7 +138,6 @@ rule assignment_collectBCs:
         "results/assignment/{assignment}/barcodes_incl_other.sorted.tsv.gz",
     params:
         batch_size=getSplitNumber(),
-    threads: 20
     conda:
         "../envs/default.yaml"
     log:

diff --git a/workflow/rules/assignment/mapping_bwa.smk b/workflow/rules/assignment/mapping_bwa.smk
@@ -39,7 +39,6 @@ rule assignment_mapping_bwa:
         ),
     output:
         bam=temp("results/assignment/{assignment}/bam/merge_split{split}.mapped.bam"),
-    threads: 1
     log:
         temp("results/logs/assignment/mapping.{assignment}.{split}.log"),
     shell:
@@ -109,7 +108,6 @@ rule assignment_collect:
         ),
     output:
         "results/assignment/{assignment}/aligned_merged_reads.bam",
-    threads: 1
     log:
         temp("results/logs/assignment/collect.{assignment}.log"),
     shell: