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kircherlab · Mar 25, 2022 · a1a83cd · a1a83cd
1 parent b351be9
commit a1a83cd
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -27,7 +27,7 @@ SCRIPTS_DIR = srcdir("scripts")
 
 
 def getScript(name):
-    return "%s%s" % (SCRIPTS_DIR, name)
+    return "%s/%s" % (SCRIPTS_DIR, name)
 
 
 ##### report workflow #####

diff --git a/workflow/rules/assignment.smk b/workflow/rules/assignment.smk
@@ -65,7 +65,7 @@ rule assignment_merge:
         R2="results/assignment/{assignment}/fastq/splits/R2.split{split}.fastq.gz",
         R3="results/assignment/{assignment}/fastq/splits/R3.split{split}.fastq.gz",
         script_FastQ2doubleIndexBAM=getScript("count/FastQ2doubleIndexBAM.py"),
-        script_MergeTrimReadsBAM=getScript("/count/MergeTrimReadsBAM.py"),
+        script_MergeTrimReadsBAM=getScript("count/MergeTrimReadsBAM.py"),
     output:
         bam=temp("results/assignment/{assignment}/bam/merge_split{split}.bam"),
     conda: