better logs

kircherlab · Mar 30, 2022 · f949aa0 · f949aa0
1 parent f459f83
commit f949aa0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/statistic/counts.smk b/workflow/rules/statistic/counts.smk
@@ -108,7 +108,7 @@ rule statistic_count_stats_merge:
         "logs/experiments/{project}/stats/counts/statistic_count_stats_merge.{countType}.log",
     shell:
         """
-        zcat {input} | sort -k1,1 -k3,3 -k2,2 > {output}
+        zcat {input} | sort -k1,1 -k3,3 -k2,2 > {output} 2> {log}
         """