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chore: Update development #128

Merged
merged 17 commits into from
Oct 17, 2024
Merged

chore: Update development #128

merged 17 commits into from
Oct 17, 2024

Commits on Sep 23, 2024

  1. docs: enhancing documentation

    Max Schubach committed Sep 23, 2024
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Commits on Sep 26, 2024

  1. docs: better quickstart

    Max Schubach committed Sep 26, 2024
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  3. docs: remove default channel from environment file

    Max Schubach committed Sep 26, 2024
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Commits on Sep 27, 2024

  1. docs: improvements, like QC report (#125)

    * added .DS_Store to gitignore.
    
    * Fixed the overflow of the features section by using the table.
    
    * Fixed the broked report link.
    
    * fixed typo project
    
    * Typo fix controlled
    
    * Sample QC report HTML file
    
    * Added the link to the QC report in experiment.
    
    * Added the assignment QC report.
    
    * Add link to QC report in assignment documentation
    
    * Update documentation in quickstart.rst. Fixed typos and gramatical mistakes.
    
    * Update documentation in index.rst. Fix typos and grammatical mistakes.
    
    * Fix typo in installation documentation
    
    * Refactor documentation in config.rst
    
    ---------
    
    Co-authored-by: Max <visze@users.noreply.github.com>
    bioinformaticsguy and visze authored Sep 27, 2024
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Commits on Sep 30, 2024

  1. docs: Fixed the link for the QC report in Experiment and Assignment (#…

    …126)
    
    * added .DS_Store to gitignore.
    
    * Fixed the overflow of the features section by using the table.
    
    * Fixed the broked report link.
    
    * fixed typo project
    
    * Typo fix controlled
    
    * Sample QC report HTML file
    
    * Added the link to the QC report in experiment.
    
    * Added the assignment QC report.
    
    * Add link to QC report in assignment documentation
    
    * Update documentation in quickstart.rst. Fixed typos and gramatical mistakes.
    
    * Update documentation in index.rst. Fix typos and grammatical mistakes.
    
    * Fix typo in installation documentation
    
    * Refactor documentation in config.rst
    
    * Update documentation links in assignment.rst and experiment.rst
    
    * Testing the iframe html file.
    
    * Update documentation links in assignment.rst and experiment.rst
    
    ---------
    
    Co-authored-by: Max <visze@users.noreply.github.com>
    bioinformaticsguy and visze authored Sep 30, 2024
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  3. docs: automatic versioning

    Max Schubach committed Sep 30, 2024
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  4. style: automatic version printing of MPRAsnakeflow

    Max Schubach committed Sep 30, 2024
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  5. fix: memory resources for bbmap (#123)

    * fix: add memory resources for bbmap
    
    * set lower memm in bbmap workflow profile
    
    * increasing memory for bmap
    
    ---------
    
    Co-authored-by: Max Schubach <max.schubach@bih-charite.de>
    Co-authored-by: Max Schubach <max.schubach@bihealth.de>
    3 people authored Sep 30, 2024
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  6. fix: Detach from anaconda (#122)

    * fix: detach from anaconda. Remove defaults conda channels
    
    * fixing linting errors
    
    * update hashes in dockerfile from lining errors
    
    ---------
    
    Co-authored-by: Max Schubach <max.schubach@bih-charite.de>
    visze and Max Schubach authored Sep 30, 2024
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  8. chore(master): release MPRAsnakeflow 0.1.1 (#124)

    * chore(master): release MPRAsnakeflow 0.1.1
    
    * Update .release-please-manifest.json
    
    * Update version.txt
    
    * Update CHANGELOG.md
    
    ---------
    
    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: Max <visze@users.noreply.github.com>
    github-actions[bot] and visze authored Sep 30, 2024
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Commits on Oct 9, 2024

  1. forgot to upgrade two envs

    Max Schubach committed Oct 9, 2024
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Commits on Oct 17, 2024

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