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15 followers · 61 following
  • Berlin

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Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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messersc/README.md

Hi there, I'm Clemens

I'm a data scientist with a background in computational biology and bioinformatics who likes to explore data to generate hypotheses, to gain new insights and to solve problems.

Technology

Linux Shell R Python Python MySQL Docker Git GitHub GitLab CircleCI

Currently learning

Azure

Publications

ORCID

Contributions

Project repository publication
SNAPPY: SNAPPY Nucleic Acid Processing Pipeline https://github.com/bihealth/snappy-pipeline unpublished
SCelVis: Easy Single-Cell Visualization https://github.com/bihealth/scelvis https://doi.org/10.7717/peerj.8607
DigestiFlow: from BCL to FASTQ with ease https://github.com/bihealth/digestiflow-demux https://doi.org/10.1093/bioinformatics/btz850
SigsPack: a package for cancer mutational signatures https://github.com/bihealth/SigsPack https://doi.org/10.1186/s12859-019-3043-7
HLA-MA: simple yet powerful matching of samples using HLA typing results https://github.com/bihealth/hlama https://doi.org/10.1093/bioinformatics/btx132

Pinned Loading

  1. bihealth/digestiflow-demux bihealth/digestiflow-demux Public

    🍝 Digestiflow Demultiplexing Tool

    Python 2 4

  2. progeny_domainadversarial_nn progeny_domainadversarial_nn Public

    Domain-Adaptation for Cancer Pathway Prediction

    Python

  3. bihealth/hlama bihealth/hlama Public

    Simple matching of HTS samples based on HLA typing

    Python 13 2

  4. affiliation_generator affiliation_generator Public

    Python script to generate list of affiliations for manuscripts

    Python

  5. bihealth/scelvis bihealth/scelvis Public

    🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️

    Python 21 5

  6. base_mask base_mask Public

    Python functions to check base masks and translate to bcl2fastq flavour

    Python