feat: allow reconstruction of amino acid sequences #1504

Job	Run time
test (python=3.7 biopython=1.73)	2m 9s
test (python=3.7 biopython=1.76)	1m 54s
test (python=3.7 biopython=1.79)	1m 57s
test (python=3.7 biopython=latest)	1m 58s
test (python=3.8 biopython=1.76)	2m 8s
test (python=3.8 biopython=1.79)	1m 57s
test (python=3.8 biopython=1.80)	1m 54s
test (python=3.8 biopython=latest)	2m 2s
test (python=3.9 biopython=1.79)	2m 8s
test (python=3.9 biopython=1.80)	2m 8s
test (python=3.9 biopython=latest)	2m 7s
test (python=3.10 biopython=1.80)	2m 2s
test (python=3.10 biopython=latest)	2m 2s
test (python=3.11 biopython=1.80)	2m 10s
test (python=3.11 biopython=latest)	2m 8s
test-pathogen-repo-ci (avian-flu)	3m 20s
test-pathogen-repo-ci (ebola)	4m 6s
test-pathogen-repo-ci (lassa)	3m 28s
test-pathogen-repo-ci (monkeypox)	3m 47s
test-pathogen-repo-ci (mumps)	4m 4s
test-pathogen-repo-ci (ncov)	3m 31s
test-pathogen-repo-ci (seasonal-flu)	3m 30s
test-pathogen-repo-ci (zika)	3m 54s
build-docs / build-pip	2m 0s
build-docs / build-conda	0s
codecov	0s
	1h 2m 24s

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