Merge pull request #148 from nextstrain/fix-gisaid-epi

Fix GISAID flu accessions
nextstrain · Nov 22, 2023 · ec1feb6 · ec1feb6
2 parents 14c500b + ab32ebd
commit ec1feb6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/vdb/flu_upload.py b/vdb/flu_upload.py
@@ -209,7 +209,7 @@ def fix_casing(self, doc):
         for field in ['gender', 'host', 'locus']:
             if field in doc and doc[field] is not None:
                 doc[field] = self.camelcase_to_snakecase(doc[field])
-        if 'accession' in doc and doc['accession'] is not None:
+        if doc.get('accession') is not None and not doc['accession'].startswith('EPI'):
             doc['accession'] = 'EPI' + doc['accession']
 
     def fix_age(self, doc):