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profiles/nextstrain-public: Update build/auspice names #153

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Apr 23, 2024
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profiles/nextstrain-public: Update build/auspice names #153

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12 changes: 6 additions & 6 deletions profiles/nextstrain-public-yamagata.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -58,9 +58,9 @@ array-builds:
- 2013-10-07
resolution:
- 6m
build_name: "flu_seasonal_{lineage}_6m"
build_name: "seasonal-flu_{lineage}_6m"
build_params: &shared-hi-build-params
auspice_name: "flu_seasonal_{lineage}_{{segment}}_{resolution}"
auspice_name: "seasonal-flu_{lineage}_{{segment}}_{resolution}"
reference: "config/{lineage}/{{segment}}/reference.fasta"
annotation: "config/{lineage}/{{segment}}/genemap.gff"
tree_exclude_sites: "config/{lineage}/{{segment}}/exclude-sites.txt"
Expand Down Expand Up @@ -97,7 +97,7 @@ array-builds:
- 2012-04-09
resolution:
- 2y
build_name: "flu_seasonal_{lineage}_2y"
build_name: "seasonal-flu_{lineage}_2y"
build_params: *shared-hi-build-params
subsamples: *subsampling-scheme
3Y-hi-builds:
Expand All @@ -112,7 +112,7 @@ array-builds:
- 2011-04-11
resolution:
- 3y
build_name: "flu_seasonal_{lineage}_3y"
build_name: "seasonal-flu_{lineage}_3y"
build_params: *shared-hi-build-params
subsamples: *subsampling-scheme
6Y-hi-builds:
Expand All @@ -127,7 +127,7 @@ array-builds:
- 2008-04-14
resolution:
- 6y
build_name: "flu_seasonal_{lineage}_6y"
build_name: "seasonal-flu_{lineage}_6y"
build_params: *shared-hi-build-params
subsamples: *subsampling-scheme
12Y-hi-builds:
Expand All @@ -142,6 +142,6 @@ array-builds:
- 2002-04-22
resolution:
- 12y
build_name: "flu_seasonal_{lineage}_12y"
build_name: "seasonal-flu_{lineage}_12y"
build_params: *shared-hi-build-params
subsamples: *subsampling-scheme
26 changes: 13 additions & 13 deletions profiles/nextstrain-public.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -57,9 +57,9 @@ array-builds:
- 6Y6M
resolution:
- 6m
build_name: "flu_seasonal_{lineage}_6m"
build_name: "seasonal-flu_{lineage}_6m"
build_params: &shared-hi-build-params
auspice_name: "flu_seasonal_{lineage}_{{segment}}_{resolution}"
auspice_name: "seasonal-flu_{lineage}_{{segment}}_{resolution}"
reference: "config/{lineage}/{{segment}}/reference.fasta"
annotation: "config/{lineage}/{{segment}}/genemap.gff"
tree_exclude_sites: "config/{lineage}/{{segment}}/exclude-sites.txt"
Expand Down Expand Up @@ -95,7 +95,7 @@ array-builds:
- 8Y
resolution:
- 2y
build_name: "flu_seasonal_{lineage}_2y"
build_name: "seasonal-flu_{lineage}_2y"
build_params: *shared-hi-build-params
subsamples: *subsampling-scheme
3Y-hi-builds:
Expand All @@ -109,7 +109,7 @@ array-builds:
- 9Y
resolution:
- 3y
build_name: "flu_seasonal_{lineage}_3y"
build_name: "seasonal-flu_{lineage}_3y"
build_params: *shared-hi-build-params
subsamples: *subsampling-scheme
6Y-hi-builds:
Expand All @@ -123,7 +123,7 @@ array-builds:
- 12Y
resolution:
- 6y
build_name: "flu_seasonal_{lineage}_6y"
build_name: "seasonal-flu_{lineage}_6y"
build_params: *shared-hi-build-params
subsamples: *subsampling-scheme
12Y-hi-builds:
Expand All @@ -137,7 +137,7 @@ array-builds:
- 18Y
resolution:
- 12y
build_name: "flu_seasonal_{lineage}_12y"
build_name: "seasonal-flu_{lineage}_12y"
build_params: *shared-hi-build-params
subsamples: *subsampling-scheme
6M-fra-builds:
Expand All @@ -148,10 +148,10 @@ array-builds:
- 6Y6M
resolution:
- 6m
build_name: "flu_seasonal_h3n2_6m"
build_name: "seasonal-flu_h3n2_6m"
build_params: &shared-fra-build-params
lineage: h3n2
auspice_name: "flu_seasonal_{lineage}_{{segment}}_{resolution}"
auspice_name: "seasonal-flu_{lineage}_{{segment}}_{resolution}"
reference: "config/{lineage}/{{segment}}/reference.fasta"
annotation: "config/{lineage}/{{segment}}/genemap.gff"
tree_exclude_sites: "config/{lineage}/{{segment}}/exclude-sites.txt"
Expand All @@ -177,10 +177,10 @@ array-builds:
- 8Y
resolution:
- 2y
build_name: "flu_seasonal_h3n2_2y"
build_name: "seasonal-flu_h3n2_2y"
build_params:
lineage: h3n2
auspice_name: "flu_seasonal_{lineage}_{{segment}}_{resolution}"
auspice_name: "seasonal-flu_{lineage}_{{segment}}_{resolution}"
reference: "config/{lineage}/{{segment}}/reference.fasta"
annotation: "config/{lineage}/{{segment}}/genemap.gff"
tree_exclude_sites: "config/{lineage}/{{segment}}/exclude-sites.txt"
Expand All @@ -206,7 +206,7 @@ array-builds:
- 9Y
resolution:
- 3y
build_name: "flu_seasonal_h3n2_3y"
build_name: "seasonal-flu_h3n2_3y"
build_params: *shared-fra-build-params
subsamples: *subsampling-scheme
6Y-fra-builds:
Expand All @@ -217,7 +217,7 @@ array-builds:
- 12Y
resolution:
- 6y
build_name: "flu_seasonal_h3n2_6y"
build_name: "seasonal-flu_h3n2_6y"
build_params: *shared-fra-build-params
subsamples: *subsampling-scheme
12Y-fra-builds:
Expand All @@ -228,7 +228,7 @@ array-builds:
- 18Y
resolution:
- 12y
build_name: "flu_seasonal_h3n2_12y"
build_name: "seasonal-flu_h3n2_12y"
build_params: *shared-fra-build-params
subsamples: *subsampling-scheme

Expand Down