Merge pull request #68 from blowekamp/add_zarr_test_data

Add zarr test data
niaid · Aug 30, 2023 · 89fceb8 · 89fceb8
2 parents 7f6d224 + a3d3c24
commit 89fceb8
Show file tree

Hide file tree

Showing 51 changed files with 156 additions and 0 deletions.
diff --git a/.gitattributes b/.gitattributes
@@ -0,0 +1,6 @@
+*.hdf5 filter=lfs diff=lfs merge=lfs -text
+*.h5 filter=lfs diff=lfs merge=lfs -text
+*.dcm filter=lfs diff=lfs merge=lfs -text
+*.png filter=lfs diff=lfs merge=lfs -text
+*.jpg filter=lfs diff=lfs merge=lfs -text
+test/data/** filter=lfs diff=lfs merge=lfs -text
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/.zattrs b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/.zattrs
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/.zgroup b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/.zgroup
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/.zarray b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/.zarray
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/.zattrs b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/.zattrs
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/0/0/0 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/0/0/0
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/0/0/1 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/0/0/1
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/0/0/2 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/0/0/2
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/0/0/3 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/0/0/3
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/1/0/0 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/1/0/0
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/1/0/1 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/1/0/1
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/1/0/2 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/1/0/2
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/1/0/3 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/1/0/3
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/2/0/0 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/2/0/0
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/2/0/1 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/2/0/1
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/2/0/2 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/2/0/2
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/2/0/3 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/2/0/3
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/3/0/0 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/3/0/0
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/3/0/1 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/3/0/1
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/3/0/2 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/3/0/2
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/3/0/3 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/0/0/0/3/0/3
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/.zarray b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/.zarray
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/.zattrs b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/.zattrs
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/0/0/0 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/0/0/0
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/0/0/1 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/0/0/1
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/1/0/0 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/1/0/0
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/1/0/1 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/1/0/1
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/2/0/0 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/2/0/0
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/2/0/1 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/2/0/1
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/3/0/0 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/3/0/0
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/3/0/1 b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/1/0/0/3/0/1
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/OME/.zattrs b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/OME/.zattrs
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/OME/.zgroup b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/OME/.zgroup
diff --git a/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/OME/METADATA.ome.xml b/test/data/2013-1220-dA30_5-BSC-1_22_full_rec.zarr/OME/METADATA.ome.xml
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k.zarr/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/.zgroup b/test/data/OM_P1_S1_ScanOnly_1k.zarr/.zgroup
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/.zgroup b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/.zgroup
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/0/.zarray b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/0/.zarray
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/0/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/0/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/0/0/0/0/0/0 b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/0/0/0/0/0/0
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/1/.zarray b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/1/.zarray
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/1/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/1/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/1/0/0/0/0/0 b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/1/0/0/0/0/0
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/2/.zarray b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/2/.zarray
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/2/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/2/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/2/0/0/0/0/0 b/test/data/OM_P1_S1_ScanOnly_1k.zarr/0/2/0/0/0/0/0
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/OME/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k.zarr/OME/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/OME/.zgroup b/test/data/OM_P1_S1_ScanOnly_1k.zarr/OME/.zgroup
diff --git a/test/data/OM_P1_S1_ScanOnly_1k.zarr/OME/METADATA.ome.xml b/test/data/OM_P1_S1_ScanOnly_1k.zarr/OME/METADATA.ome.xml
diff --git a/trufflehog3.yml b/trufflehog3.yml
@@ -10,3 +10,6 @@ exclude: # exclude matching issues
      pattern: USERNAME:PASSWORD@artifactory.niaid.nih.gov/artifactory/api/pypi/bcbb-pypi/simple
      paths:
        - README.rst
+   - message: Test Data in LFS
+     paths:
+       - test/data/**