fix: Change unit tests floating point type to double and add a precision argument to output streams #87
Workflow file for this run
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| name: Compile python package | |
| on: | |
| push: | |
| branches: [master, feature/github-release] | |
| tags: | |
| - '[0-9]+.[0-9]+.[0-9]+' | |
| pull_request: | |
| branches: [master, develop] | |
| workflow_dispatch: | |
| env: | |
| BOOST_MAJOR_VERSION: '1' | |
| BOOST_MINOR_VERSION: '80' | |
| BOOST_PATCH_VERSION: '0' | |
| LIBNABO_VERSION: '1.0.7' | |
| PYBIND11_VERSION: 'v2.10.2' | |
| BOOST_INSTALL_PATH: ${{ github.workspace }}/.tmp/boost/install | |
| BOOST_SRC_DIR: ${{ github.workspace }}/.tmp/boost | |
| LIBNABO_INSTALL_PATH: ${{ github.workspace }}/.tmp/libnabo-build/install | |
| LIBNABO_SRC_DIR: ${{ github.workspace }}/.tmp/libnabo | |
| PYBIND11_INSTALL_PATH: ${{ github.workspace }}/.tmp/pybind11-build/install | |
| PYBIND11_SRC_DIR: ${{ github.workspace }}/.tmp/pybind11 | |
| PYTHON_WHEEL_DIR: ${{ github.workspace }}/.tmp/python-wheel | |
| VCPKG_DEFAULT_BINARY_CACHE: '${{ github.workspace }}/.tmp/bin-cache' | |
| CMAKE_BUILD_PARALLEL_LEVEL: 2 | |
| BUILD_DIR: ${{ github.workspace }}/build | |
| jobs: | |
| compile-python-package: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python_version: ['3.8', '3.9', '3.10', '3.11'] | |
| os: | |
| # - windows-2019 cannot compile on Windows | |
| # (!) TODO: The workflow contains code for Windows building, but we cannot compile it with MS MPI. Changes in the source code are needed. | |
| - ubuntu-20.04 | |
| permissions: | |
| contents: write | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Make temp dir | |
| run: mkdir ${{ github.workspace }}/.tmp | |
| - name: Init base env variable on Linux | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| echo "BOOST_DIR=boost_${{ env.BOOST_MAJOR_VERSION }}_${{ env.BOOST_MINOR_VERSION }}_${{ env.BOOST_PATCH_VERSION }}" >> $GITHUB_ENV | |
| echo "BOOST_VERSION=${{ env.BOOST_MAJOR_VERSION }}.${{ env.BOOST_MINOR_VERSION }}.${{ env.BOOST_PATCH_VERSION }}" >> $GITHUB_ENV | |
| - name: Init env variable on Linux | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| echo "BOOST_ARCHIVE_NAME=${{ env.BOOST_DIR }}.7z" >> $GITHUB_ENV | |
| - name: Init base env variable on Windows | |
| if: ${{ runner.os == 'Windows' }} | |
| run: | | |
| echo "BOOST_DIR=boost_${{ env.BOOST_MAJOR_VERSION }}_${{ env.BOOST_MINOR_VERSION }}_${{ env.BOOST_PATCH_VERSION }}" | Out-File -FilePath $env:GITHUB_ENV -Append | |
| echo "BOOST_VERSION=${{ env.BOOST_MAJOR_VERSION }}.${{ env.BOOST_MINOR_VERSION }}.${{ env.BOOST_PATCH_VERSION }}" | Out-File -FilePath $env:GITHUB_ENV -Append | |
| - name: Init env variable on Windows | |
| if: ${{ runner.os == 'Windows' }} | |
| run: | | |
| echo "BOOST_ARCHIVE_NAME=${{ env.BOOST_DIR }}.zip" | Out-File -FilePath $env:GITHUB_ENV -Append | |
| - name: Cache boost | |
| id: cache-boost | |
| if: ${{ runner.os == 'Linux' }} | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.BOOST_INSTALL_PATH }} | |
| key: ${{ runner.os }}-boost-cache-${{ env.BOOST_VERSION }}-python-${{ matrix.python_version }} | |
| - name: Cache libnabo | |
| id: cache-libnabo | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.LIBNABO_INSTALL_PATH }} | |
| key: ${{ runner.os }}-libnabo-cache-${{ env.LIBNABO_VERSION }} | |
| - name: Cache binary vcpkg | |
| if: ${{ runner.os == 'Windows' }} | |
| id: cache-vcpkg | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.VCPKG_DEFAULT_BINARY_CACHE }} | |
| key: ${{ runner.os }}-vcpkg-cache-${{ matrix.python_version }} | |
| - name: Cache pybind11 | |
| id: cache-pybind11 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.PYBIND11_INSTALL_PATH }} | |
| key: ${{ runner.os }}-pybind11-cache--${{ env.PYBIND11_VERSION }}-python-${{ matrix.python_version }} | |
| - name: Make dirs on Linux | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| mkdir -p ${{ env.BOOST_SRC_DIR }} | |
| mkdir -p ${{ env.LIBNABO_SRC_DIR }} | |
| mkdir -p ${{ env.PYBIND11_SRC_DIR }} | |
| mkdir -p ${{ env.BOOST_INSTALL_PATH }} | |
| mkdir -p ${{ env.PYBIND11_INSTALL_PATH }} | |
| mkdir -p ${{ env.LIBNABO_INSTALL_PATH }} | |
| mkdir -p ${{ env.VCPKG_DEFAULT_BINARY_CACHE }} | |
| - name: Make dirs on Windows | |
| if: ${{ runner.os == 'Windows' }} | |
| run: | | |
| mkdir -Force ${{ env.BOOST_SRC_DIR }} | |
| mkdir -Force ${{ env.LIBNABO_SRC_DIR }} | |
| mkdir -Force ${{ env.PYBIND11_SRC_DIR }} | |
| mkdir -Force ${{ env.BOOST_INSTALL_PATH }} | |
| mkdir -Force ${{ env.PYBIND11_INSTALL_PATH }} | |
| mkdir -Force ${{ env.LIBNABO_INSTALL_PATH }} | |
| mkdir -Force ${{ env.VCPKG_DEFAULT_BINARY_CACHE }} | |
| - name: Install dependencies on Linux | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| sudo apt update | |
| sudo apt install -y --no-install-recommends g++ \ | |
| gcc \ | |
| make \ | |
| libeigen3-dev \ | |
| libyaml-cpp-dev \ | |
| ninja-build \ | |
| catch \ | |
| libomp-dev \ | |
| wget | |
| - name: Install MS MPI | |
| if: ${{ runner.os == 'Windows' }} | |
| working-directory: ${{ runner.temp }} | |
| run: | | |
| Invoke-WebRequest https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe -OutFile ./msmpisetup.exe | |
| Start-Process -Wait -FilePath ./msmpisetup.exe -ArgumentList "-unattend","-log","./log.txt" -NoNewWindow | |
| cat ./log.txt | |
| - name: Set up Python ${{ matrix.python_version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| cache: 'pip' | |
| - name: Install required dependencies for Python | |
| run: | | |
| python -m pip install -U 'pip>=23.0' | |
| pip install 'numpy>=1.20' wheel 'setuptools>=61.0' 'build~=0.10' | |
| - name: Install dependencies on Windows | |
| if: ${{ runner.os == 'Windows' }} | |
| run: | | |
| vcpkg install eigen3:x64-windows-static ` | |
| libopenmpt:x64-windows ` | |
| boost-mpi:x64-windows-static ` | |
| boost-thread:x64-windows-static ` | |
| boost-filesystem:x64-windows-static ` | |
| boost-system:x64-windows-static ` | |
| boost-program-options:x64-windows-static ` | |
| boost-date-time:x64-windows-static ` | |
| boost-chrono:x64-windows-static ` | |
| boost-regex[icu]:x64-windows-static ` | |
| boost-assign:x64-windows-static ` | |
| boost-timer:x64-windows-static ` | |
| --clean-after-build | |
| - name: Download boost ${{ env.BOOST_VERSION }} on Linux | |
| if: ${{ steps.cache-boost.outputs.cache-hit != 'true' && runner.os == 'Linux' }} | |
| working-directory: ${{ env.BOOST_SRC_DIR }} | |
| run: | | |
| wget --no-verbose https://archives.boost.io/release/${{ env.BOOST_VERSION }}/source/${{ env.BOOST_ARCHIVE_NAME }} | |
| 7z -y x ${{ env.BOOST_ARCHIVE_NAME }} | |
| rm ${{ env.BOOST_ARCHIVE_NAME }} | |
| - name: Configure static boost on Linux | |
| if: ${{ steps.cache-boost.outputs.cache-hit != 'true' && runner.os == 'Linux' }} | |
| working-directory: ${{ env.BOOST_SRC_DIR }}/${{ env.BOOST_DIR }} | |
| run: | | |
| ./bootstrap.sh --with-libraries=thread,filesystem,system,program_options,date_time,chrono --with-icu --prefix=${{ env.BOOST_INSTALL_PATH }} | |
| ./b2 cxxflags=-fPIC cflags=-fPIC link=static install | |
| - name: Download source code libnabo ${{ env.LIBNABO_VERSION }} | |
| if: steps.cache-libnabo.outputs.cache-hit != 'true' | |
| working-directory: ${{ env.LIBNABO_SRC_DIR }} | |
| run: | | |
| git clone -b ${{ env.LIBNABO_VERSION }} --single-branch https://github.com/norlab-ulaval/libnabo.git | |
| - name: Install libnabo ${{ env.LIBNABO_VERSION }} on Windows | |
| if: ${{ steps.cache-libnabo.outputs.cache-hit != 'true' && runner.os == 'Windows' }} | |
| working-directory: ${{ env.LIBNABO_SRC_DIR }} | |
| run: | | |
| cd libnabo | |
| cmake -A x64 ` | |
| -DCMAKE_TOOLCHAIN_FILE="$env:VCPKG_INSTALLATION_ROOT/scripts/buildsystems/vcpkg.cmake" ` | |
| -DCMAKE_INSTALL_PREFIX=${{ env.LIBNABO_INSTALL_PATH }} ` | |
| -DCMAKE_BUILD_TYPE=RelWithDebInfo ` | |
| -DUSE_OPEN_MP:BOOL=ON ` | |
| -S . -B ./build | |
| cmake --build ./build --target install | |
| cd - | |
| rm -r ./libnabo/build | |
| - name: Install libnabo ${{ env.LIBNABO_VERSION }} on Linux | |
| if: ${{ steps.cache-libnabo.outputs.cache-hit != 'true' && runner.os == 'Linux' }} | |
| working-directory: ${{ env.LIBNABO_SRC_DIR }} | |
| run: | | |
| cd libnabo | |
| cmake -GNinja \ | |
| -DBOOST_ROOT=${{ env.BOOST_INSTALL_PATH }} \ | |
| -DCMAKE_INSTALL_PREFIX=${{ env.LIBNABO_INSTALL_PATH }} \ | |
| -DCMAKE_BUILD_TYPE=RelWithDebInfo \ | |
| -DUSE_OPEN_MP:BOOL=ON \ | |
| -S . -B ./build | |
| cmake --build ./build --target install | |
| cd - | |
| rm -r ./libnabo/build | |
| - name: Download source code pybind11 ${{ env.PYBIND11_VERSION }} | |
| if: steps.cache-pybind11.outputs.cache-hit != 'true' | |
| working-directory: ${{ env.PYBIND11_SRC_DIR }} | |
| run: | | |
| git clone -b ${{ env.PYBIND11_VERSION }} --single-branch https://github.com/pybind/pybind11.git | |
| - name: Install pybind11 ${{ env.PYBIND11_VERSION }} on Linux | |
| working-directory: ${{ env.PYBIND11_SRC_DIR }} | |
| if: ${{ steps.cache-pybind11.outputs.cache-hit != 'true' && runner.os == 'Linux' }} | |
| run: | | |
| cd pybind11 | |
| cmake -GNinja \ | |
| -DCMAKE_INSTALL_PREFIX=${{ env.PYBIND11_INSTALL_PATH }} \ | |
| -DCMAKE_BUILD_TYPE=RelWithDebInfo \ | |
| -DPYBIND11_TEST:BOOL=OFF \ | |
| -S . -B ./build | |
| cmake --build ./build --target install | |
| rm -r ./build | |
| - name: Install pybind11 ${{ env.PYBIND11_VERSION }} on Windows | |
| working-directory: ${{ env.PYBIND11_SRC_DIR }} | |
| if: ${{ steps.cache-pybind11.outputs.cache-hit != 'true' && runner.os == 'Windows' }} | |
| run: | | |
| cd pybind11 | |
| cmake -A x64 ` | |
| -DCMAKE_TOOLCHAIN_FILE="$env:VCPKG_INSTALLATION_ROOT/scripts/buildsystems/vcpkg.cmake" ` | |
| -DCMAKE_INSTALL_PREFIX=${{ env.PYBIND11_INSTALL_PATH }} ` | |
| -DCMAKE_BUILD_TYPE=RelWithDebInfo ` | |
| -DPYBIND11_TEST:BOOL=OFF ` | |
| -S . -B ./build | |
| cmake --build ./build --target install | |
| rm -r ./build | |
| - name: Compile libpointmatcher on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| cmake \ | |
| -DBOOST_ROOT:PATH=${{ env.BOOST_INSTALL_PATH }} \ | |
| -DLIBNABO_INSTALL_DIR=${{ env.LIBNABO_INSTALL_PATH }} \ | |
| -Dpybind11_DIR=${{ env.PYBIND11_INSTALL_PATH }}/share/cmake/pybind11 \ | |
| -DBUILD_PYTHON_MODULE:BOOL=ON \ | |
| -DUSE_OPEN_MP:BOOL=ON \ | |
| -DBoost_USE_STATIC_LIBS:BOOL=ON \ | |
| -DCMAKE_BUILD_TYPE=RelWithDebInfo \ | |
| -S . -B ${{ env.BUILD_DIR }} | |
| sudo cmake --build ${{ env.BUILD_DIR }} --target install | |
| - name: Compile libpointmatcher on Windows | |
| if: runner.os == 'Windows' | |
| env: | |
| PYTHON_PACKAGE_NAME: pypointmatcher | |
| run: | | |
| cmake -A x64 ` | |
| -DCMAKE_TOOLCHAIN_FILE:FILEPATH="$env:VCPKG_INSTALLATION_ROOT/scripts/buildsystems/vcpkg.cmake" ` | |
| -DLIBNABO_INSTALL_DIR:PATH="${{ env.LIBNABO_INSTALL_PATH }}" ` | |
| -Dpybind11_DIR:PATH="${{ env.PYBIND11_INSTALL_PATH }}/share/cmake/pybind11" ` | |
| -DBUILD_PYTHON_MODULE:BOOL=ON ` | |
| -DBoost_USE_STATIC_LIBS:BOOL=ON ` | |
| -DPYTHON_INSTALL_TARGET:PATH="./python/${{ env.PYTHON_PACKAGE_NAME }}" ` | |
| -DVCPKG_TARGET_TRIPLET="x64-windows-static" ` | |
| -DUSE_OPEN_MP:BOOL=ON ` | |
| -DCMAKE_BUILD_TYPE="RelWithDebInfo" ` | |
| -S . -B ${{ env.BUILD_DIR }} | |
| cmake --build ${{ env.BUILD_DIR }} --target install | |
| - name: Build python wheel | |
| working-directory: ./python | |
| run: | | |
| python -m build --wheel --no-isolation --outdir ${{ env.PYTHON_WHEEL_DIR }} | |
| - name: Install package | |
| working-directory: ./python | |
| run: | | |
| pip install ${{ env.PYTHON_WHEEL_DIR }}/*.whl | |
| - name: Test import | |
| working-directory: ${{ runner.temp }} | |
| run: python -c "from pypointmatcher import *" | |
| - name: Upload python wheel | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: libpointmatcher python ${{ matrix.python_version }} wheel | |
| path: ${{ env.PYTHON_WHEEL_DIR }}/*.whl | |
| if-no-files-found: error | |
| retention-days: 10 | |
| - uses: ncipollo/release-action@v1 | |
| if: github.ref_type == 'tag' | |
| with: | |
| artifacts: "${{ env.PYTHON_WHEEL_DIR }}/*.whl" | |
| prerelease: true | |
| allowUpdates: true | |
| generateReleaseNotes: true |