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Update pytests #207

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merged 2 commits into from
Nov 1, 2023
Merged

Update pytests #207

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a0904fc
Update pytests based on latest data
zhx828 Oct 31, 2023
8339804
Update pytest.yml
zhx828 Nov 1, 2023
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4 changes: 2 additions & 2 deletions .github/workflows/pytest.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ jobs:
strategy:
matrix:
os: [ ubuntu-latest, macos-latest ]
python-version: [ '2.7','3.7','3.8','3.9','3.10','3.11' ]
python-version: [ '3.7','3.8','3.9','3.10','3.11' ]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
Expand All @@ -58,7 +58,7 @@ jobs:
runs-on: windows-latest
strategy:
matrix:
python-version: [ '2.7','3.7','3.8','3.9','3.10','3.11' ]
python-version: [ '3.7','3.8','3.9','3.10','3.11' ]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
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4 changes: 2 additions & 2 deletions test_Annotation.py
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Expand Up @@ -278,7 +278,7 @@ def test_cna():
assert len(annotation) == NUMBER_OF_ANNOTATION_COLUMNS
assert annotation[MUTATION_EFFECT_INDEX] == 'Gain-of-function'
assert annotation[ONCOGENIC_INDEX] == 'Oncogenic'
assert annotation[HIGHEST_LEVEL_INDEX] == 'LEVEL_2'
assert annotation[HIGHEST_LEVEL_INDEX] == 'LEVEL_1'

annotation = annotations[3]
assert len(annotation) == NUMBER_OF_ANNOTATION_COLUMNS
Expand All @@ -304,7 +304,7 @@ def check_brca2_s1882_without_cancertype(annotation):
assert annotation[MUTATION_EFFECT_INDEX] == 'Likely Loss-of-function'
assert annotation[ONCOGENIC_INDEX] == 'Likely Oncogenic'
assert annotation[HIGHEST_LEVEL_INDEX] == 'LEVEL_1'
assert annotation[LEVEL_1_INDEX] == 'Olaparib,Olaparib+Bevacizumab,Rucaparib,Niraparib'
assert annotation[LEVEL_1_INDEX] == 'Olaparib,Olaparib+Bevacizumab,Rucaparib,Olaparib+Abiraterone+Prednisone,Niraparib,Olaparib+Abiraterone+Prednisolone,Talazoparib+Enzalutamide'
assert annotation[LEVEL_2_INDEX] == 'Olaparib,Rucaparib,Niraparib'
assert annotation[LEVEL_3A_INDEX] == 'Olaparib,Talazoparib'

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