Skip to content

@PlantandFoodResearch Plant and Food Research

Change the repository type filter

All

    Repositories list

    74 repositories

    • aspire-lite

      Public
      Aspire Asparagus Android app written by Alastair Hughes
      Java
      •
      Other
      •2•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • ApsimX

      Public
      ApsimX is the next generation of APSIM
      C#
      •
      Other
      •162•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • MCHap

      Public
      Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
      numpyarrayhaplotypesbayesian-inferencedna-sequencesgenotypingpolyploidyhaplotype-assemblyhaplotype-blockspolyploid-genotyping
      Python
      •
      MIT License
      •3•18•21•0•Updated Sep 18, 2024Sep 18, 2024

    • hidecan

      Public
      Package to create hidecan plots for GWAS and differential expression results
      R
      •
      Other
      •1•4•0•0•Updated Sep 18, 2024Sep 18, 2024

    • machine-vision-acquisition

      Public
      A playpen for generic machine vision acquisition workflows
      Python
      •
      MIT License
      •1•6•1•0•Updated Apr 29, 2024Apr 29, 2024

    • SVS

      Public
      SVS tool development
      Python
      •4•0•0•3•Updated Jan 30, 2024Jan 30, 2024

    • LoggerPrograms

      Public
      This repository contains programs written for controlling data loggers
      Visual Basic .NET
      •0•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • 20-by-2020

      Public
      Data analysis for a collaborative project with FAR aiming to improve wheat yields
      Jupyter Notebook
      •3•0•0•0•Updated Nov 29, 2023Nov 29, 2023

    • KateLindyMaryamTestRepo

      Public
      R
      •5•0•0•2•Updated Mar 2, 2023Mar 2, 2023

    • Xcm_detection_using_Minion_Sequencing

      Public
      0•0•0•0•Updated Feb 24, 2023Feb 24, 2023

    • Tuber_bruising

      Public
      Scripts for analysis of genetic components of tuber bruising
      Jupyter Notebook
      •1•0•0•0•Updated Dec 14, 2022Dec 14, 2022

    • sandpit

      Public
      A demonstration repository
      Jupyter Notebook
      •32•1•0•8•Updated Dec 14, 2022Dec 14, 2022

    • github-automation

      Public
      Scripts and tools to automate github
      JavaScript
      •0•0•0•1•Updated Jun 25, 2022Jun 25, 2022

    • pyeagleio

      Public
      Python library to interact with https://eagle.io/
      Python
      •0•2•0•0•Updated Jun 22, 2022Jun 22, 2022

    • pytomicropy

      Public
      Python to Micropython converter
      Python
      •0•10•0•0•Updated Feb 7, 2022Feb 7, 2022

    • pyserialdrivers

      Public
      A collection of OOB serial drivers for interacting with predominantly environmental sensors
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 16, 2021Sep 16, 2021

    • ONT_CRISPR-Cas9_enrichment

      Public
      Public Repository for publication workflows
      Jupyter Notebook
      •2•2•0•0•Updated Sep 5, 2021Sep 5, 2021

    • Example-Tetraploid-Potato-VCF-PRJNA414303

      Public
      Example tetraploid VCF from NCBI BioProject PRJNA414303
      Shell
      •0•0•0•0•Updated May 29, 2021May 29, 2021

    • TEFingerprint

      Public
      A Python3 library for transposon fingerprinting
      bioinformaticsclusteringtransposonsdensity-based-clusteringrepeated-elements
      Python
      •
      MIT License
      •2•0•10•0•Updated May 26, 2021May 26, 2021

    • nextflow-demo

      Public
      Various examples of using NextFlow in the PFR Environment
      Shell
      •
      GNU General Public License v3.0
      •116•0•0•0•Updated May 21, 2021May 21, 2021

    • assemblathon2-analysis

      Public
      collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
      Perl
      •21•0•0•0•Updated Mar 29, 2021Mar 29, 2021

    • eFP-Browser

      Public
      Python
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Jan 2, 2021Jan 2, 2021

    • AppSecret

      Public
      R6 Package to Work with PKI and AES-256-CBC
      shared-secretsaes-encryption
      R
      •
      Other
      •0•0•3•1•Updated Dec 7, 2020Dec 7, 2020

    • docker-ckan

      Public
      Docker Compose setup for CKAN
      Dockerfile
      •89•0•0•0•Updated Jun 4, 2020Jun 4, 2020

    • PFR_Spinnaker_Ros_Node

      Public
      Point Grey (FLIR) Spinnaker based camera driver (Blackfly S etc.)
      C++
      •
      MIT License
      •90•0•0•0•Updated May 27, 2020May 27, 2020

    • QuickTestMassBalanceCalculator

      Public
      Quick test mass balance calculator. This is a shiny implementation of QTMB as developed in N messure it mange it SFF project.
      R
      •0•0•0•0•Updated Apr 15, 2020Apr 15, 2020

    • APSIM_Docker

      Public archive
      Dockerfile and helper files to build Apsim Classic in a Docker container
      Dockerfile
      •
      MIT License
      •1•1•0•0•Updated Apr 14, 2020Apr 14, 2020

    • ckanext-pfr

      Public
      Configuration and settings associated with PFR's CKAN instance
      ckanckanext
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Apr 13, 2020Apr 13, 2020

    • APSIM.Shared

      Public
      C#
      •39•0•0•0•Updated Mar 8, 2020Mar 8, 2020

    • radar-twist

      Public
      Repository for translating arduino interpreted radar speeds into ROS twist with covariance
      CMake
      •0•0•0•0•Updated Feb 19, 2020Feb 19, 2020